miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14023 3' -53.9 NC_003521.1 + 30060 0.67 0.970552
Target:  5'- uACGUCUcagUCUGUgccGUCCcCGCCGGc -3'
miRNA:   3'- uUGCAGAaa-AGGCG---UAGGuGCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 143085 0.72 0.829983
Target:  5'- uACGUCggaUUCGCAgCCGcCGCCGGAg -3'
miRNA:   3'- uUGCAGaaaAGGCGUaGGU-GCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 203313 0.72 0.821607
Target:  5'- gGACGUCgcugaugUCCGCGggCCcgaaaACGCCGGGg -3'
miRNA:   3'- -UUGCAGaaa----AGGCGUa-GG-----UGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 65761 0.67 0.964434
Target:  5'- gGACG-CUgacgggCCGCAUCaCAccgcCGCCGGAc -3'
miRNA:   3'- -UUGCaGAaaa---GGCGUAG-GU----GCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 234336 0.68 0.961064
Target:  5'- -cCGUCa---CCGCcUCCGCuGCCGGAc -3'
miRNA:   3'- uuGCAGaaaaGGCGuAGGUG-CGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 88449 0.74 0.690464
Target:  5'- aGACGUCg--UCCGCcUCgGCGUCGGGc -3'
miRNA:   3'- -UUGCAGaaaAGGCGuAGgUGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 232085 0.68 0.961064
Target:  5'- cGCGUCUcguuUUUCCGCGUCCcCGUuacacgCGGu -3'
miRNA:   3'- uUGCAGA----AAAGGCGUAGGuGCG------GCCu -5'
14023 3' -53.9 NC_003521.1 + 226911 0.7 0.883307
Target:  5'- cAGCG-CggccUCCGCGgcccccUCCGCGCCGGGc -3'
miRNA:   3'- -UUGCaGaaa-AGGCGU------AGGUGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 53663 0.7 0.890095
Target:  5'- cACGUUgcUUCCGCuccugCCGcCGCCGGGc -3'
miRNA:   3'- uUGCAGaaAAGGCGua---GGU-GCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 164498 0.7 0.892749
Target:  5'- -cCGUCgccUCCGCAgcugucgccgccaccUCCGCuGCCGGAc -3'
miRNA:   3'- uuGCAGaaaAGGCGU---------------AGGUG-CGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 234487 0.69 0.940906
Target:  5'- -uCGUCU--UCCGCGgaUCCuauCGCCGGc -3'
miRNA:   3'- uuGCAGAaaAGGCGU--AGGu--GCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 192481 0.68 0.953673
Target:  5'- cGGCGgucggCUgaucaCCGUGUCCACGCUGGu -3'
miRNA:   3'- -UUGCa----GAaaa--GGCGUAGGUGCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 200917 0.68 0.949645
Target:  5'- cAGCG-C-UUUCCGCG-CC-CGCCGGGa -3'
miRNA:   3'- -UUGCaGaAAAGGCGUaGGuGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 101562 0.66 0.987336
Target:  5'- cGGCGUCgucguccccCCGC-UCCGCGCgaGGAg -3'
miRNA:   3'- -UUGCAGaaaa-----GGCGuAGGUGCGg-CCU- -5'
14023 3' -53.9 NC_003521.1 + 103847 0.66 0.987638
Target:  5'- cGCGUCUcggCCuCGUCCAgGCUGGc -3'
miRNA:   3'- uUGCAGAaaaGGcGUAGGUgCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 187567 0.66 0.987638
Target:  5'- --gGUCUUUUUCGCcaaGUCCGCgggggcuucGCCGGc -3'
miRNA:   3'- uugCAGAAAAGGCG---UAGGUG---------CGGCCu -5'
14023 3' -53.9 NC_003521.1 + 187287 0.66 0.987787
Target:  5'- cGCGUUUcUUUCgGCAgcccggugggagcggCCGCGUCGGAc -3'
miRNA:   3'- uUGCAGA-AAAGgCGUa--------------GGUGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 239014 0.68 0.949645
Target:  5'- aGACGUCguggCUGCAUU--CGCCGGAc -3'
miRNA:   3'- -UUGCAGaaaaGGCGUAGguGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 128201 0.69 0.920645
Target:  5'- cAGCGUCUUgagCGCGUCCACGaaguccaucuuCUGGAu -3'
miRNA:   3'- -UUGCAGAAaagGCGUAGGUGC-----------GGCCU- -5'
14023 3' -53.9 NC_003521.1 + 89287 0.69 0.914996
Target:  5'- gAugGUacaacCCGCGUCCGCGCCGc- -3'
miRNA:   3'- -UugCAgaaaaGGCGUAGGUGCGGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.