miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14023 5' -58.4 NC_003521.1 + 21 0.7 0.666824
Target:  5'- gGUCCCGGgggGugGGGGggUguuuuuGGCgGggGg -3'
miRNA:   3'- -CAGGGCCa--CugCCCCuuG------CCGaCuuU- -5'
14023 5' -58.4 NC_003521.1 + 132698 0.66 0.902114
Target:  5'- -gCCCGGcUGGCGGGacGCGGCa---- -3'
miRNA:   3'- caGGGCC-ACUGCCCcuUGCCGacuuu -5'
14023 5' -58.4 NC_003521.1 + 187935 0.66 0.894025
Target:  5'- aGUCCUGGUcgcguucggcguacGACGGacuGcACGGCUGGAAg -3'
miRNA:   3'- -CAGGGCCA--------------CUGCCc--CuUGCCGACUUU- -5'
14023 5' -58.4 NC_003521.1 + 99677 0.66 0.892107
Target:  5'- -gCCCGGUGcACGGGGuugccgaaggucucgGGCGGCc---- -3'
miRNA:   3'- caGGGCCAC-UGCCCC---------------UUGCCGacuuu -5'
14023 5' -58.4 NC_003521.1 + 47538 0.66 0.887558
Target:  5'- uGUCCCGGaGgucguccaugucgaGCGGGGAagACGGC-GAGc -3'
miRNA:   3'- -CAGGGCCaC--------------UGCCCCU--UGCCGaCUUu -5'
14023 5' -58.4 NC_003521.1 + 31033 0.66 0.882908
Target:  5'- uUCgUGGUGGUGGGGggUGGgaGGAc -3'
miRNA:   3'- cAGgGCCACUGCCCCuuGCCgaCUUu -5'
14023 5' -58.4 NC_003521.1 + 133761 0.67 0.846852
Target:  5'- -gCCCGGcGAuucCGGGGAcGCGGCgGAGu -3'
miRNA:   3'- caGGGCCaCU---GCCCCU-UGCCGaCUUu -5'
14023 5' -58.4 NC_003521.1 + 98422 0.67 0.839079
Target:  5'- uGUCCggUGGUGGCGGGGcgggcguACGG-UGAGAc -3'
miRNA:   3'- -CAGG--GCCACUGCCCCu------UGCCgACUUU- -5'
14023 5' -58.4 NC_003521.1 + 69779 0.67 0.831131
Target:  5'- -aCCaCGGcGACGaGGGAGCGGCcgucGAGAu -3'
miRNA:   3'- caGG-GCCaCUGC-CCCUUGCCGa---CUUU- -5'
14023 5' -58.4 NC_003521.1 + 198312 0.69 0.75295
Target:  5'- uUCCCuGGggGugGGGGAugGGCg---- -3'
miRNA:   3'- cAGGG-CCa-CugCCCCUugCCGacuuu -5'
14023 5' -58.4 NC_003521.1 + 123730 0.69 0.743665
Target:  5'- aUCCCGGacgcGCGGGGAACaGCaGAAGg -3'
miRNA:   3'- cAGGGCCac--UGCCCCUUGcCGaCUUU- -5'
14023 5' -58.4 NC_003521.1 + 66799 0.69 0.724833
Target:  5'- uUCgCUGGUGACGcaGGAcCGGCUGAAGc -3'
miRNA:   3'- cAG-GGCCACUGCc-CCUuGCCGACUUU- -5'
14023 5' -58.4 NC_003521.1 + 240570 0.7 0.666824
Target:  5'- gGUCCCGGgggGugGGGGggUguuuuuGGCgGggGg -3'
miRNA:   3'- -CAGGGCCa--CugCCCCuuG------CCGaCuuU- -5'
14023 5' -58.4 NC_003521.1 + 100372 0.69 0.73429
Target:  5'- --aCgGGUGACGGGGA-CGGCacgGAGg -3'
miRNA:   3'- cagGgCCACUGCCCCUuGCCGa--CUUu -5'
14023 5' -58.4 NC_003521.1 + 69698 0.7 0.705705
Target:  5'- gGUCCUGGUGuCGGuGGcGGCGGCccUGAGGu -3'
miRNA:   3'- -CAGGGCCACuGCC-CC-UUGCCG--ACUUU- -5'
14023 5' -58.4 NC_003521.1 + 40343 0.7 0.666824
Target:  5'- gGUCCCGGgggGugGGGGggUguuuuuGGCgGggGg -3'
miRNA:   3'- -CAGGGCCa--CugCCCCuuG------CCGaCuuU- -5'
14023 5' -58.4 NC_003521.1 + 150015 0.71 0.657019
Target:  5'- -cCCCGGgGAaggGGGGGGgGGCUGggGa -3'
miRNA:   3'- caGGGCCaCUg--CCCCUUgCCGACuuU- -5'
14023 5' -58.4 NC_003521.1 + 197277 0.73 0.520926
Target:  5'- --gCCGGcGGCGGGGAGCGGgaGGGc -3'
miRNA:   3'- cagGGCCaCUGCCCCUUGCCgaCUUu -5'
14023 5' -58.4 NC_003521.1 + 186928 0.75 0.422101
Target:  5'- --gCCGGUGGCGGGGGcgGCGGC-GAAc -3'
miRNA:   3'- cagGGCCACUGCCCCU--UGCCGaCUUu -5'
14023 5' -58.4 NC_003521.1 + 148274 0.66 0.88952
Target:  5'- aUUCCGGguugGGggaGGGGAACgcuGGCUGAGg -3'
miRNA:   3'- cAGGGCCa---CUg--CCCCUUG---CCGACUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.