miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14024 3' -56.9 NC_003521.1 + 72149 0.66 0.955119
Target:  5'- gGCcUGcCACcagGGACCUccGGCGCCGUCGGc -3'
miRNA:   3'- -CGaGC-GUG---UCUGGG--UCGUGGCAGUCc -5'
14024 3' -56.9 NC_003521.1 + 135625 0.66 0.955119
Target:  5'- aGCUCGCggGCGGAuCCCAcgAUCGgCGGGg -3'
miRNA:   3'- -CGAGCG--UGUCU-GGGUcgUGGCaGUCC- -5'
14024 3' -56.9 NC_003521.1 + 192361 0.66 0.955119
Target:  5'- uGCUCGCACGGGC--GGCGuuGg-GGGa -3'
miRNA:   3'- -CGAGCGUGUCUGggUCGUggCagUCC- -5'
14024 3' -56.9 NC_003521.1 + 53767 0.66 0.955119
Target:  5'- cGCUCGCugGcACCCuucccGC-CCGUUAGc -3'
miRNA:   3'- -CGAGCGugUcUGGGu----CGuGGCAGUCc -5'
14024 3' -56.9 NC_003521.1 + 46086 0.66 0.955119
Target:  5'- cGCccggCGuCGCAGACCUuguAGCGCCGccUCcGGa -3'
miRNA:   3'- -CGa---GC-GUGUCUGGG---UCGUGGC--AGuCC- -5'
14024 3' -56.9 NC_003521.1 + 126835 0.66 0.955119
Target:  5'- uGCUCGCcCAcGAa-CuGCACCGcCAGGa -3'
miRNA:   3'- -CGAGCGuGU-CUggGuCGUGGCaGUCC- -5'
14024 3' -56.9 NC_003521.1 + 210403 0.66 0.955119
Target:  5'- uGUUCaGCugGGACCgCAGCGUgGUCGGc -3'
miRNA:   3'- -CGAG-CGugUCUGG-GUCGUGgCAGUCc -5'
14024 3' -56.9 NC_003521.1 + 183149 0.66 0.955119
Target:  5'- --cCGUGCAGACCCAGaCGgUGUCGu- -3'
miRNA:   3'- cgaGCGUGUCUGGGUC-GUgGCAGUcc -5'
14024 3' -56.9 NC_003521.1 + 152335 0.66 0.954746
Target:  5'- aCUCGUuCGGGCCC-GCGCCGacgcugcUCuGGg -3'
miRNA:   3'- cGAGCGuGUCUGGGuCGUGGC-------AGuCC- -5'
14024 3' -56.9 NC_003521.1 + 150913 0.66 0.952854
Target:  5'- aCUgCGCGCccuuccacggcguguGGGCCgAGCGCgGUCAGa -3'
miRNA:   3'- cGA-GCGUG---------------UCUGGgUCGUGgCAGUCc -5'
14024 3' -56.9 NC_003521.1 + 14441 0.66 0.951302
Target:  5'- --gUGCACAcGGCCCugcGGCGgCGUCAGc -3'
miRNA:   3'- cgaGCGUGU-CUGGG---UCGUgGCAGUCc -5'
14024 3' -56.9 NC_003521.1 + 208223 0.66 0.951302
Target:  5'- cGCagGUACAGACaCCAGaGCCacagCAGGa -3'
miRNA:   3'- -CGagCGUGUCUG-GGUCgUGGca--GUCC- -5'
14024 3' -56.9 NC_003521.1 + 171384 0.66 0.951302
Target:  5'- cCUCGCGCAccugcGACuCCAccgugguggugcGCGCCGUCAc- -3'
miRNA:   3'- cGAGCGUGU-----CUG-GGU------------CGUGGCAGUcc -5'
14024 3' -56.9 NC_003521.1 + 129631 0.66 0.951302
Target:  5'- -aUCGCcCAG-CCCaccguccgcGGCGCCGUCgccGGGg -3'
miRNA:   3'- cgAGCGuGUCuGGG---------UCGUGGCAG---UCC- -5'
14024 3' -56.9 NC_003521.1 + 78197 0.66 0.951302
Target:  5'- gGCgugCGgaGCGGGCgCGGCGCuCGUCGGa -3'
miRNA:   3'- -CGa--GCg-UGUCUGgGUCGUG-GCAGUCc -5'
14024 3' -56.9 NC_003521.1 + 115645 0.66 0.951302
Target:  5'- gGCUCGUGC-GugUCGGCGCCccaguggCGGGu -3'
miRNA:   3'- -CGAGCGUGuCugGGUCGUGGca-----GUCC- -5'
14024 3' -56.9 NC_003521.1 + 143177 0.66 0.951302
Target:  5'- ---gGguCGGACCCGGCGCCGcCGc- -3'
miRNA:   3'- cgagCguGUCUGGGUCGUGGCaGUcc -5'
14024 3' -56.9 NC_003521.1 + 122669 0.66 0.951302
Target:  5'- --gCGCGaucgaGGcGCCCAGCACCGacagcugCGGGg -3'
miRNA:   3'- cgaGCGUg----UC-UGGGUCGUGGCa------GUCC- -5'
14024 3' -56.9 NC_003521.1 + 91086 0.66 0.951302
Target:  5'- --aCGCAacagGGGCCCGucugcgccuGCGCCgGUCGGGg -3'
miRNA:   3'- cgaGCGUg---UCUGGGU---------CGUGG-CAGUCC- -5'
14024 3' -56.9 NC_003521.1 + 27811 0.66 0.950513
Target:  5'- gGCUCGCccggcgccaugguACAGAUCCAGUuucaccagggcgaGCCG-CuGGg -3'
miRNA:   3'- -CGAGCG-------------UGUCUGGGUCG-------------UGGCaGuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.