Results 41 - 60 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14029 | 3' | -56.6 | NC_003521.1 | + | 182068 | 0.72 | 0.673335 |
Target: 5'- --gGCGugGGGUAcGGGCCaGCCGAGAa -3' miRNA: 3'- ccgCGCugUCCAU-CUCGGgUGGUUCU- -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 145488 | 0.73 | 0.623992 |
Target: 5'- -aCGCuGCAGGUGGAGCCCugCGc-- -3' miRNA: 3'- ccGCGcUGUCCAUCUCGGGugGUucu -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 238516 | 0.73 | 0.614112 |
Target: 5'- cGGCGCGAgCAGGUgcgAGAGCUCgucgGCCAgcGGGu -3' miRNA: 3'- -CCGCGCU-GUCCA---UCUCGGG----UGGU--UCU- -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 167909 | 0.74 | 0.584573 |
Target: 5'- --aGCGGCAGGUGGGGCgCCGCgauCGAGGg -3' miRNA: 3'- ccgCGCUGUCCAUCUCG-GGUG---GUUCU- -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 180190 | 0.75 | 0.516089 |
Target: 5'- gGGCuuGCGACAGGagacgUAGAGCacgcagaaggccaCCACCAGGAa -3' miRNA: 3'- -CCG--CGCUGUCC-----AUCUCG-------------GGUGGUUCU- -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 92018 | 0.71 | 0.759483 |
Target: 5'- aGGCGCGGCggcggcggcgguGGGUccgGGGGUCC-CCGGGGu -3' miRNA: 3'- -CCGCGCUG------------UCCA---UCUCGGGuGGUUCU- -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 76194 | 0.71 | 0.76864 |
Target: 5'- aGGCGCcACAGGaUGGgccagaAGCCCGCCGGc- -3' miRNA: 3'- -CCGCGcUGUCC-AUC------UCGGGUGGUUcu -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 109681 | 0.68 | 0.866737 |
Target: 5'- uGGCaccCaGCAGGUAGAGCUCcuggcgggcgaagGCCGAGAg -3' miRNA: 3'- -CCGc--GcUGUCCAUCUCGGG-------------UGGUUCU- -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 81676 | 0.69 | 0.860161 |
Target: 5'- aGGCGUacuGACAGGUGGuauucuGCUCAucuuccacgucCCAGGAg -3' miRNA: 3'- -CCGCG---CUGUCCAUCu-----CGGGU-----------GGUUCU- -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 55836 | 0.69 | 0.860161 |
Target: 5'- aGCGCGGCAGGcc-GGCCUugCAcAGGu -3' miRNA: 3'- cCGCGCUGUCCaucUCGGGugGU-UCU- -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 7807 | 0.69 | 0.844998 |
Target: 5'- cGGCGUGuCGGGgugcAGAacGCCUACCgAAGAc -3' miRNA: 3'- -CCGCGCuGUCCa---UCU--CGGGUGG-UUCU- -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 78885 | 0.69 | 0.844998 |
Target: 5'- aGGCGCGuCAGG--GGGUCCACgCGGGc -3' miRNA: 3'- -CCGCGCuGUCCauCUCGGGUG-GUUCu -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 145114 | 0.69 | 0.820917 |
Target: 5'- uGGCGCcuaacuaccGGCAGGUGGAGCUCuuucaGCUgcugGAGAa -3' miRNA: 3'- -CCGCG---------CUGUCCAUCUCGGG-----UGG----UUCU- -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 163060 | 0.7 | 0.812561 |
Target: 5'- cGUGCGGCAcuacGUgaAGAGCCaCGCCGAGGc -3' miRNA: 3'- cCGCGCUGUc---CA--UCUCGG-GUGGUUCU- -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 147470 | 0.7 | 0.812561 |
Target: 5'- uGGCGCGACAGGccgugaaGGuGGCCCAgaUgAGGAa -3' miRNA: 3'- -CCGCGCUGUCCa------UC-UCGGGU--GgUUCU- -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 218042 | 0.7 | 0.812561 |
Target: 5'- cGGCgGCGuccGCAGGUAGAugagGUCCACCGu-- -3' miRNA: 3'- -CCG-CGC---UGUCCAUCU----CGGGUGGUucu -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 59565 | 0.7 | 0.795397 |
Target: 5'- cGGCGCcGCGGGgguuucguccgAGaAGCgCGCCAAGAa -3' miRNA: 3'- -CCGCGcUGUCCa----------UC-UCGgGUGGUUCU- -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 32113 | 0.7 | 0.785719 |
Target: 5'- cGGCGCGgcugaucucggGCAGGUAGcgggcgcGGUgCACCAAGc -3' miRNA: 3'- -CCGCGC-----------UGUCCAUC-------UCGgGUGGUUCu -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 100226 | 0.7 | 0.777683 |
Target: 5'- aGGC-CGGCgAGGUGGAGCUgGgCGAGGu -3' miRNA: 3'- -CCGcGCUG-UCCAUCUCGGgUgGUUCU- -5' |
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14029 | 3' | -56.6 | NC_003521.1 | + | 18279 | 0.71 | 0.76864 |
Target: 5'- -cCGCGACGGG-AGGGCCCGCa---- -3' miRNA: 3'- ccGCGCUGUCCaUCUCGGGUGguucu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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