miRNA display CGI


Results 41 - 60 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14029 5' -65.3 NC_003521.1 + 224420 0.74 0.219684
Target:  5'- cGCC--GGCcaGGCGCUGCGUGGUGGg -3'
miRNA:   3'- cCGGacCCGcaCCGCGACGCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 47379 0.75 0.200864
Target:  5'- uGCCgacgaaGGGUcccagGGCGCUGCGCGaGCGGa -3'
miRNA:   3'- cCGGa-----CCCGca---CCGCGACGCGC-CGCC- -5'
14029 5' -65.3 NC_003521.1 + 43137 0.75 0.200864
Target:  5'- cGGCgCUGGGCGUggaGGUGCacGCGCuGGUGGc -3'
miRNA:   3'- -CCG-GACCCGCA---CCGCGa-CGCG-CCGCC- -5'
14029 5' -65.3 NC_003521.1 + 213118 0.78 0.135809
Target:  5'- cGCgCUGGGUGUGGCGUgGUGCGGCc- -3'
miRNA:   3'- cCG-GACCCGCACCGCGaCGCGCCGcc -5'
14029 5' -65.3 NC_003521.1 + 214808 0.78 0.129574
Target:  5'- cGCCgucGGGCGccgGGCGCgGCGaCGGCGGu -3'
miRNA:   3'- cCGGa--CCCGCa--CCGCGaCGC-GCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 41630 0.72 0.316863
Target:  5'- uGGUCUgGGGCGUGGCGCc-CGUGGUc- -3'
miRNA:   3'- -CCGGA-CCCGCACCGCGacGCGCCGcc -5'
14029 5' -65.3 NC_003521.1 + 89972 0.72 0.316863
Target:  5'- cGGCCguucgGGGUucaaccggcggGUGGCGCUGCGgGGaCa- -3'
miRNA:   3'- -CCGGa----CCCG-----------CACCGCGACGCgCC-Gcc -5'
14029 5' -65.3 NC_003521.1 + 37415 0.69 0.451379
Target:  5'- gGGCCUGaccGUGUGGCGCgGCGCcgagccucugaaGGUGa -3'
miRNA:   3'- -CCGGACc--CGCACCGCGaCGCG------------CCGCc -5'
14029 5' -65.3 NC_003521.1 + 99184 0.69 0.426814
Target:  5'- cGGCCUGGGgGcUGaaGgUG-GCGGCGGa -3'
miRNA:   3'- -CCGGACCCgC-ACcgCgACgCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 221820 0.69 0.425205
Target:  5'- cGGCg-GGGCG-GGCGUgucucccucgucGCGCGGCGc -3'
miRNA:   3'- -CCGgaCCCGCaCCGCGa-----------CGCGCCGCc -5'
14029 5' -65.3 NC_003521.1 + 128921 0.7 0.418804
Target:  5'- cGGUUgaGGGCcUGGCGCgccaGCGUGGCGu -3'
miRNA:   3'- -CCGGa-CCCGcACCGCGa---CGCGCCGCc -5'
14029 5' -65.3 NC_003521.1 + 150618 0.7 0.410885
Target:  5'- gGGCUguUGcGGC--GGCuGCUGCGCaGGCGGg -3'
miRNA:   3'- -CCGG--AC-CCGcaCCG-CGACGCG-CCGCC- -5'
14029 5' -65.3 NC_003521.1 + 226861 0.7 0.403061
Target:  5'- aGGCCcaucaGGGCGUccagcgagGGCaGCUGCGggggcaccaCGGCGGc -3'
miRNA:   3'- -CCGGa----CCCGCA--------CCG-CGACGC---------GCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 224684 0.7 0.403061
Target:  5'- cGUCUuGGCGUGGCGCccGgGCGuGUGGa -3'
miRNA:   3'- cCGGAcCCGCACCGCGa-CgCGC-CGCC- -5'
14029 5' -65.3 NC_003521.1 + 34368 0.7 0.403061
Target:  5'- aGGuCCUGGGCGUuGCGCaccaGCagGUGGUGGc -3'
miRNA:   3'- -CC-GGACCCGCAcCGCGa---CG--CGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 129210 0.7 0.383164
Target:  5'- uGGUCUGGcGCGUGGUgggcaguccggcgccGCUggccacGCGCGGCa- -3'
miRNA:   3'- -CCGGACC-CGCACCG---------------CGA------CGCGCCGcc -5'
14029 5' -65.3 NC_003521.1 + 72846 0.7 0.380162
Target:  5'- cGGCCUGGG-GcGGCGaCgguagGCaCGGCGGu -3'
miRNA:   3'- -CCGGACCCgCaCCGC-Ga----CGcGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 214428 0.71 0.328187
Target:  5'- cGGCgUGGGUGacGGUGCUGCagaaguugaugacgGCGGCGc -3'
miRNA:   3'- -CCGgACCCGCa-CCGCGACG--------------CGCCGCc -5'
14029 5' -65.3 NC_003521.1 + 239225 0.72 0.326167
Target:  5'- aGGCgCUGGuGgaUGUGGCGCUgcacggccgucagcaGCGaCGGCGGg -3'
miRNA:   3'- -CCG-GACC-C--GCACCGCGA---------------CGC-GCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 168565 0.72 0.323488
Target:  5'- gGGCUgcGGGUaagGUGGCgGCUGacccaGCGGCGGc -3'
miRNA:   3'- -CCGGa-CCCG---CACCG-CGACg----CGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.