miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1403 5' -54.1 NC_001335.1 + 42494 0.66 0.769537
Target:  5'- --gGGUCGggCGAccAUGAagauccucaaGCUGCGCGGc -3'
miRNA:   3'- cuaCCAGCgaGCU--UGCU----------CGAUGCGCC- -5'
1403 5' -54.1 NC_001335.1 + 30081 0.67 0.748977
Target:  5'- --gGGcacUCGCUCGAA-GAGCUGauCGCGa -3'
miRNA:   3'- cuaCC---AGCGAGCUUgCUCGAU--GCGCc -5'
1403 5' -54.1 NC_001335.1 + 7675 0.67 0.747935
Target:  5'- aGGUGGagUCGcCUCGGGCGAugagcagGCccuCGCGGa -3'
miRNA:   3'- -CUACC--AGC-GAGCUUGCU-------CGau-GCGCC- -5'
1403 5' -54.1 NC_001335.1 + 47161 0.67 0.727939
Target:  5'- -cUGGUCGacgUGGAUGcAGCcgACGCGGu -3'
miRNA:   3'- cuACCAGCga-GCUUGC-UCGa-UGCGCC- -5'
1403 5' -54.1 NC_001335.1 + 35798 0.68 0.695691
Target:  5'- -cUGGaCGCUCaGAACGggGGCUAUGCa- -3'
miRNA:   3'- cuACCaGCGAG-CUUGC--UCGAUGCGcc -5'
1403 5' -54.1 NC_001335.1 + 11054 0.68 0.695691
Target:  5'- cGGUGucgCGCUC-AGCGAGCUugGCc- -3'
miRNA:   3'- -CUACca-GCGAGcUUGCUCGAugCGcc -5'
1403 5' -54.1 NC_001335.1 + 8916 0.68 0.650776
Target:  5'- cGggGGUCGaucucggcgugcaUUCGggUGGGCggcucgACGCGGa -3'
miRNA:   3'- -CuaCCAGC-------------GAGCuuGCUCGa-----UGCGCC- -5'
1403 5' -54.1 NC_001335.1 + 3100 0.69 0.607767
Target:  5'- gGGUGcUCGUUCGAcuuCGAGUcggACGCGGc -3'
miRNA:   3'- -CUACcAGCGAGCUu--GCUCGa--UGCGCC- -5'
1403 5' -54.1 NC_001335.1 + 8136 0.69 0.5858
Target:  5'- --aGGUucgCGUUCGAcuGCGAGCgacucgaggACGCGGu -3'
miRNA:   3'- cuaCCA---GCGAGCU--UGCUCGa--------UGCGCC- -5'
1403 5' -54.1 NC_001335.1 + 48796 0.7 0.57487
Target:  5'- aGGUGGUCGagcaGGACGcGGCgaccggACGCGGu -3'
miRNA:   3'- -CUACCAGCgag-CUUGC-UCGa-----UGCGCC- -5'
1403 5' -54.1 NC_001335.1 + 12123 0.7 0.542397
Target:  5'- cGUGGUCGCucaggauggUCGGACGGGCcACaauccgaccgagGCGGa -3'
miRNA:   3'- cUACCAGCG---------AGCUUGCUCGaUG------------CGCC- -5'
1403 5' -54.1 NC_001335.1 + 46459 0.71 0.483602
Target:  5'- -uUGGU-GCUCuaccgaggcgacaagGAACGAGCUGCGCuGGc -3'
miRNA:   3'- cuACCAgCGAG---------------CUUGCUCGAUGCG-CC- -5'
1403 5' -54.1 NC_001335.1 + 19456 0.71 0.469375
Target:  5'- -cUGGUCGCUggCGAGCGGGUgcucgaGUGGg -3'
miRNA:   3'- cuACCAGCGA--GCUUGCUCGaug---CGCC- -5'
1403 5' -54.1 NC_001335.1 + 50304 0.74 0.324402
Target:  5'- --cGGUCGUUCGAACGcuucAGCUugGCc- -3'
miRNA:   3'- cuaCCAGCGAGCUUGC----UCGAugCGcc -5'
1403 5' -54.1 NC_001335.1 + 41351 1.11 0.001002
Target:  5'- gGAUGGUCGCUCGAACGAGCUACGCGGg -3'
miRNA:   3'- -CUACCAGCGAGCUUGCUCGAUGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.