Results 81 - 100 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14035 | 3' | -53.6 | NC_003521.1 | + | 112779 | 0.67 | 0.981642 |
Target: 5'- cGCGUcGGcCAcuucuaccgcguGCGGCGcgaGGUGCCGcGCa -3' miRNA: 3'- -CGCA-CCaGU------------UGCCGUa--CUACGGCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 164554 | 0.67 | 0.981642 |
Target: 5'- cGCGaGGUCuc--GCAgGcgGCCGUGCg -3' miRNA: 3'- -CGCaCCAGuugcCGUaCuaCGGCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 115256 | 0.67 | 0.981642 |
Target: 5'- cCGUGGUCGGgGGCAgcAUGcCCGUc- -3' miRNA: 3'- cGCACCAGUUgCCGUacUAC-GGCAcg -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 180088 | 0.67 | 0.982431 |
Target: 5'- cGCGUcaccccguccagggaGGgCAGCGGCGUGGUGCgaccCGcGCc -3' miRNA: 3'- -CGCA---------------CCaGUUGCCGUACUACG----GCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 28370 | 0.67 | 0.983566 |
Target: 5'- gGCcUGGUUGAUGGCGUG--GCaCGUGUc -3' miRNA: 3'- -CGcACCAGUUGCCGUACuaCG-GCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 122660 | 0.67 | 0.983566 |
Target: 5'- gGCGUcGUCuGCGGCGguggGGUGgCGUcGCc -3' miRNA: 3'- -CGCAcCAGuUGCCGUa---CUACgGCA-CG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 101054 | 0.67 | 0.983566 |
Target: 5'- gGCGgccGcCGACGGCcgGAuccUGCCGUcgGCa -3' miRNA: 3'- -CGCac-CaGUUGCCGuaCU---ACGGCA--CG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 43470 | 0.67 | 0.983566 |
Target: 5'- aGCG-GGcCAgcGCGGCg----GCCGUGCu -3' miRNA: 3'- -CGCaCCaGU--UGCCGuacuaCGGCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 112096 | 0.66 | 0.985334 |
Target: 5'- gGCGccaaGaUCAGCGGCGUGAUGgUGaGCa -3' miRNA: 3'- -CGCa---CcAGUUGCCGUACUACgGCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 90826 | 0.66 | 0.985334 |
Target: 5'- gGCGUcGUCGuGCGGCG-GGUGCgcgccgccCGUGCu -3' miRNA: 3'- -CGCAcCAGU-UGCCGUaCUACG--------GCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 232575 | 0.66 | 0.986797 |
Target: 5'- uGUGUGGUgAGCGGggggcgaCAUGcguacGUCGUGCu -3' miRNA: 3'- -CGCACCAgUUGCC-------GUACua---CGGCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 84594 | 0.66 | 0.986952 |
Target: 5'- gGUGUGGUCGAccagcuCGGCGUcGGUGaCG-GCc -3' miRNA: 3'- -CGCACCAGUU------GCCGUA-CUACgGCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 166619 | 0.66 | 0.986952 |
Target: 5'- aCGUGGcagaaGACGGCGUcggGCCGcGCg -3' miRNA: 3'- cGCACCag---UUGCCGUAcuaCGGCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 228238 | 0.66 | 0.986952 |
Target: 5'- cGC-UGGUCGugGuGgGUGccGCCGUGg -3' miRNA: 3'- -CGcACCAGUugC-CgUACuaCGGCACg -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 176823 | 0.66 | 0.986952 |
Target: 5'- gGCGUGGUgAACGGUAaaugGCCcacuugGCa -3' miRNA: 3'- -CGCACCAgUUGCCGUacuaCGGca----CG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 167041 | 0.66 | 0.987559 |
Target: 5'- aGCucgGG-CAGCGGCGUGGcgcucaugacgccggUGCCG-GCc -3' miRNA: 3'- -CGca-CCaGUUGCCGUACU---------------ACGGCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 217641 | 0.66 | 0.988429 |
Target: 5'- gGCGUGGUCGgggggcAUGGCggGAU-CCGgggGUu -3' miRNA: 3'- -CGCACCAGU------UGCCGuaCUAcGGCa--CG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 58829 | 0.66 | 0.988429 |
Target: 5'- cGCGUGG-CGGCcgugacguuacuGGCGcgGAUGCCcaGCa -3' miRNA: 3'- -CGCACCaGUUG------------CCGUa-CUACGGcaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 49115 | 0.66 | 0.988429 |
Target: 5'- cGCGUGGUgAccGCGGCGcc--GCUGcUGCg -3' miRNA: 3'- -CGCACCAgU--UGCCGUacuaCGGC-ACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 226310 | 0.66 | 0.98857 |
Target: 5'- gGCGUGGUgucguugaggaacaaGAUGuGCAUGGUGCgCGcGCc -3' miRNA: 3'- -CGCACCAg--------------UUGC-CGUACUACG-GCaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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