Results 81 - 100 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14035 | 3' | -53.6 | NC_003521.1 | + | 165611 | 0.66 | 0.992094 |
Target: 5'- uCGUGGUUGGCGGCGUGcagaAUGuaGUa- -3' miRNA: 3'- cGCACCAGUUGCCGUAC----UACggCAcg -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 166619 | 0.66 | 0.986952 |
Target: 5'- aCGUGGcagaaGACGGCGUcggGCCGcGCg -3' miRNA: 3'- cGCACCag---UUGCCGUAcuaCGGCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 167041 | 0.66 | 0.987559 |
Target: 5'- aGCucgGG-CAGCGGCGUGGcgcucaugacgccggUGCCG-GCc -3' miRNA: 3'- -CGca-CCaGUUGCCGUACU---------------ACGGCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 170174 | 0.69 | 0.952264 |
Target: 5'- -gGUGGUCGAcuuCGGagcgGUGGUGCCG-GUg -3' miRNA: 3'- cgCACCAGUU---GCCg---UACUACGGCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 172072 | 0.75 | 0.689414 |
Target: 5'- uGCGUcaGGaccgucagCGGCGGCGUGAUGaaguCCGUGCg -3' miRNA: 3'- -CGCA--CCa-------GUUGCCGUACUAC----GGCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 176823 | 0.66 | 0.986952 |
Target: 5'- gGCGUGGUgAACGGUAaaugGCCcacuugGCa -3' miRNA: 3'- -CGCACCAgUUGCCGUacuaCGGca----CG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 177525 | 0.69 | 0.939354 |
Target: 5'- -gGUGGUUGAUGGCGUGGaucagcaGCUGcUGCa -3' miRNA: 3'- cgCACCAGUUGCCGUACUa------CGGC-ACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 178640 | 0.67 | 0.974856 |
Target: 5'- uGCGUcGUUGGCGGUc-GAUGCCGUcuugGCg -3' miRNA: 3'- -CGCAcCAGUUGCCGuaCUACGGCA----CG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 179888 | 0.66 | 0.992094 |
Target: 5'- uCGaUGGUCAugGGCGaacccuUGCCGUa- -3' miRNA: 3'- cGC-ACCAGUugCCGUacu---ACGGCAcg -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 180088 | 0.67 | 0.982431 |
Target: 5'- cGCGUcaccccguccagggaGGgCAGCGGCGUGGUGCgaccCGcGCc -3' miRNA: 3'- -CGCA---------------CCaGUUGCCGUACUACG----GCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 183973 | 0.69 | 0.939354 |
Target: 5'- cCGUGGgCuuCGaCAaGAUGCCGUGCu -3' miRNA: 3'- cGCACCaGuuGCcGUaCUACGGCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 184127 | 0.69 | 0.956121 |
Target: 5'- uGCGcGGccgaGACGGCGUGuUGaUCGUGCa -3' miRNA: 3'- -CGCaCCag--UUGCCGUACuAC-GGCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 196221 | 0.66 | 0.992094 |
Target: 5'- aGCGUGuGUCGcaGCuGCA-GGUGUCGcGCg -3' miRNA: 3'- -CGCAC-CAGU--UGcCGUaCUACGGCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 196392 | 0.71 | 0.894863 |
Target: 5'- uGCGUGGUgaagggCGGCGGCAgguagagcagguUGuagGCCGUGa -3' miRNA: 3'- -CGCACCA------GUUGCCGU------------ACua-CGGCACg -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 196464 | 0.69 | 0.952264 |
Target: 5'- gGCGUGGgccgCAGCcccagcGCGUcgcgGAUGCgGUGCa -3' miRNA: 3'- -CGCACCa---GUUGc-----CGUA----CUACGgCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 196952 | 0.75 | 0.679471 |
Target: 5'- aGCGUGGgCGACGGCccggGAgccgGCCGggGCg -3' miRNA: 3'- -CGCACCaGUUGCCGua--CUa---CGGCa-CG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 198801 | 0.79 | 0.510859 |
Target: 5'- uGCGUGGUgcCGGCGGCGUc-UGUCGUGCc -3' miRNA: 3'- -CGCACCA--GUUGCCGUAcuACGGCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 199664 | 0.67 | 0.979554 |
Target: 5'- --uUGGUCauguagaugGugGGCGUcGAguaGCCGUGCa -3' miRNA: 3'- cgcACCAG---------UugCCGUA-CUa--CGGCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 203335 | 0.72 | 0.867255 |
Target: 5'- aGCGUGG-CGAUGGg--GGUGCCcUGCg -3' miRNA: 3'- -CGCACCaGUUGCCguaCUACGGcACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 205348 | 0.68 | 0.966403 |
Target: 5'- ---cGG-CGGCGGCAgcugcGCCGUGCa -3' miRNA: 3'- cgcaCCaGUUGCCGUacua-CGGCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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