Results 61 - 80 of 116 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14035 | 3' | -53.6 | NC_003521.1 | + | 123970 | 0.67 | 0.979554 |
Target: 5'- cGCGcaGGUCGucGCGGUcgGcgGCCGUc- -3' miRNA: 3'- -CGCa-CCAGU--UGCCGuaCuaCGGCAcg -5' |
|||||||
14035 | 3' | -53.6 | NC_003521.1 | + | 122727 | 0.69 | 0.952264 |
Target: 5'- uCGUGGUCGugGGCGacGgcGCCGccgaugGCu -3' miRNA: 3'- cGCACCAGUugCCGUa-CuaCGGCa-----CG- -5' |
|||||||
14035 | 3' | -53.6 | NC_003521.1 | + | 122660 | 0.67 | 0.983566 |
Target: 5'- gGCGUcGUCuGCGGCGguggGGUGgCGUcGCc -3' miRNA: 3'- -CGCAcCAGuUGCCGUa---CUACgGCA-CG- -5' |
|||||||
14035 | 3' | -53.6 | NC_003521.1 | + | 119262 | 0.7 | 0.913262 |
Target: 5'- cGCGUGGUCAAgauGCAggUGGUGgCCGaGCa -3' miRNA: 3'- -CGCACCAGUUgc-CGU--ACUAC-GGCaCG- -5' |
|||||||
14035 | 3' | -53.6 | NC_003521.1 | + | 118703 | 0.66 | 0.990993 |
Target: 5'- cCGUGuUCAgccGCGGCGaGAcGCCGcUGCa -3' miRNA: 3'- cGCACcAGU---UGCCGUaCUaCGGC-ACG- -5' |
|||||||
14035 | 3' | -53.6 | NC_003521.1 | + | 117273 | 0.66 | 0.990993 |
Target: 5'- cCGccGUCGuCGGcCGUGGUGCCG-GCu -3' miRNA: 3'- cGCacCAGUuGCC-GUACUACGGCaCG- -5' |
|||||||
14035 | 3' | -53.6 | NC_003521.1 | + | 115256 | 0.67 | 0.981642 |
Target: 5'- cCGUGGUCGGgGGCAgcAUGcCCGUc- -3' miRNA: 3'- cGCACCAGUUgCCGUacUAC-GGCAcg -5' |
|||||||
14035 | 3' | -53.6 | NC_003521.1 | + | 113834 | 0.69 | 0.956121 |
Target: 5'- aCGUcGGgCAGCGGCAgcgggGcgGCCG-GCg -3' miRNA: 3'- cGCA-CCaGUUGCCGUa----CuaCGGCaCG- -5' |
|||||||
14035 | 3' | -53.6 | NC_003521.1 | + | 113280 | 0.72 | 0.852209 |
Target: 5'- --cUGGcCGACGGCGUGcUGCCGccGCa -3' miRNA: 3'- cgcACCaGUUGCCGUACuACGGCa-CG- -5' |
|||||||
14035 | 3' | -53.6 | NC_003521.1 | + | 112779 | 0.67 | 0.981642 |
Target: 5'- cGCGUcGGcCAcuucuaccgcguGCGGCGcgaGGUGCCGcGCa -3' miRNA: 3'- -CGCA-CCaGU------------UGCCGUa--CUACGGCaCG- -5' |
|||||||
14035 | 3' | -53.6 | NC_003521.1 | + | 112096 | 0.66 | 0.985334 |
Target: 5'- gGCGccaaGaUCAGCGGCGUGAUGgUGaGCa -3' miRNA: 3'- -CGCa---CcAGUUGCCGUACUACgGCaCG- -5' |
|||||||
14035 | 3' | -53.6 | NC_003521.1 | + | 111596 | 0.7 | 0.907355 |
Target: 5'- cGCGUGGcCAGCGGCGccgGAcUGCCcaccacGCg -3' miRNA: 3'- -CGCACCaGUUGCCGUa--CU-ACGGca----CG- -5' |
|||||||
14035 | 3' | -53.6 | NC_003521.1 | + | 108451 | 0.69 | 0.934596 |
Target: 5'- cGCG-GGUguGCGGCGUGccGCUGauacccUGCa -3' miRNA: 3'- -CGCaCCAguUGCCGUACuaCGGC------ACG- -5' |
|||||||
14035 | 3' | -53.6 | NC_003521.1 | + | 107749 | 0.67 | 0.979554 |
Target: 5'- aGUGUGGcggcugCGAUGGCuGUGAcUGCUGcUGCu -3' miRNA: 3'- -CGCACCa-----GUUGCCG-UACU-ACGGC-ACG- -5' |
|||||||
14035 | 3' | -53.6 | NC_003521.1 | + | 106288 | 0.68 | 0.972232 |
Target: 5'- cCGUGGagggCAACaGCAaccaggcgGcgGCCGUGCg -3' miRNA: 3'- cGCACCa---GUUGcCGUa-------CuaCGGCACG- -5' |
|||||||
14035 | 3' | -53.6 | NC_003521.1 | + | 105938 | 0.76 | 0.639408 |
Target: 5'- cGUGUGGcCGGCGcGgAUGAUGaCCGUGUg -3' miRNA: 3'- -CGCACCaGUUGC-CgUACUAC-GGCACG- -5' |
|||||||
14035 | 3' | -53.6 | NC_003521.1 | + | 103799 | 0.66 | 0.989774 |
Target: 5'- cCGUGcUC--CGGCGaGAUGaCCGUGCg -3' miRNA: 3'- cGCACcAGuuGCCGUaCUAC-GGCACG- -5' |
|||||||
14035 | 3' | -53.6 | NC_003521.1 | + | 101054 | 0.67 | 0.983566 |
Target: 5'- gGCGgccGcCGACGGCcgGAuccUGCCGUcgGCa -3' miRNA: 3'- -CGCac-CaGUUGCCGuaCU---ACGGCA--CG- -5' |
|||||||
14035 | 3' | -53.6 | NC_003521.1 | + | 98218 | 0.7 | 0.918941 |
Target: 5'- gGCG-GG-CAGCGGCGUGGgagGCgGggagGCg -3' miRNA: 3'- -CGCaCCaGUUGCCGUACUa--CGgCa---CG- -5' |
|||||||
14035 | 3' | -53.6 | NC_003521.1 | + | 97047 | 0.69 | 0.943883 |
Target: 5'- aCGU--UCAugGGCGUGAUGUCGaagugGCa -3' miRNA: 3'- cGCAccAGUugCCGUACUACGGCa----CG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home