Results 81 - 100 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14035 | 3' | -53.6 | NC_003521.1 | + | 93064 | 0.66 | 0.989774 |
Target: 5'- cCGUGGUgGugGcCAUGG-GCCuGUGCu -3' miRNA: 3'- cGCACCAgUugCcGUACUaCGG-CACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 90826 | 0.66 | 0.985334 |
Target: 5'- gGCGUcGUCGuGCGGCG-GGUGCgcgccgccCGUGCu -3' miRNA: 3'- -CGCAcCAGU-UGCCGUaCUACG--------GCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 88068 | 0.68 | 0.963186 |
Target: 5'- cGCgGUGGUCGGCGGCGc----CCGUGa -3' miRNA: 3'- -CG-CACCAGUUGCCGUacuacGGCACg -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 87277 | 0.73 | 0.811348 |
Target: 5'- cGCGUGGcCAACGGgccCGaGGUGCgCGUGUu -3' miRNA: 3'- -CGCACCaGUUGCC---GUaCUACG-GCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 86316 | 0.69 | 0.948186 |
Target: 5'- gGCGUGauucuggcacGUCAGCcGgGUGGUgagGCCGUGCa -3' miRNA: 3'- -CGCAC----------CAGUUGcCgUACUA---CGGCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 85471 | 0.67 | 0.977294 |
Target: 5'- -gGUGGUCGu---CGUGGUGCCgGUGCc -3' miRNA: 3'- cgCACCAGUugccGUACUACGG-CACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 84594 | 0.66 | 0.986952 |
Target: 5'- gGUGUGGUCGAccagcuCGGCGUcGGUGaCG-GCc -3' miRNA: 3'- -CGCACCAGUU------GCCGUA-CUACgGCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 76953 | 0.69 | 0.94344 |
Target: 5'- uGCGUuccagcaugucgcGGcCGAUGcGCGUGAUGCUGgcgGCg -3' miRNA: 3'- -CGCA-------------CCaGUUGC-CGUACUACGGCa--CG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 72728 | 0.67 | 0.974856 |
Target: 5'- cGCGUGuUgGAgGGCAuccgaccggUGGUGCCGcGCu -3' miRNA: 3'- -CGCACcAgUUgCCGU---------ACUACGGCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 68676 | 0.66 | 0.990993 |
Target: 5'- aGCGUGGaagaGGCGGCcAUG-UGCCGc-- -3' miRNA: 3'- -CGCACCag--UUGCCG-UACuACGGCacg -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 68386 | 0.67 | 0.977294 |
Target: 5'- aGCGaGGUgGACGcCGUGAgaUGCCGgcuggGCa -3' miRNA: 3'- -CGCaCCAgUUGCcGUACU--ACGGCa----CG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 68044 | 0.72 | 0.827388 |
Target: 5'- gGCGUGGUCcGCGGCgcccccgGUGGcagccagaaUGCCGgGCc -3' miRNA: 3'- -CGCACCAGuUGCCG-------UACU---------ACGGCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 66365 | 0.7 | 0.918941 |
Target: 5'- cGCGUGGcCGGCGGCGagcagcGAcaccaGCgCGUGCg -3' miRNA: 3'- -CGCACCaGUUGCCGUa-----CUa----CG-GCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 59864 | 0.69 | 0.952264 |
Target: 5'- ---cGGUCAACGGCGauGUGCCGc-- -3' miRNA: 3'- cgcaCCAGUUGCCGUacUACGGCacg -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 59157 | 0.66 | 0.992094 |
Target: 5'- -gGUGGaUCAgcuGCGGCAcGgcGCCGcggGCa -3' miRNA: 3'- cgCACC-AGU---UGCCGUaCuaCGGCa--CG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 58829 | 0.66 | 0.988429 |
Target: 5'- cGCGUGG-CGGCcgugacguuacuGGCGcgGAUGCCcaGCa -3' miRNA: 3'- -CGCACCaGUUG------------CCGUa-CUACGGcaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 53515 | 0.69 | 0.952264 |
Target: 5'- gGCGUcG-CAGCGGCcgAUGGUGCUGUccGCu -3' miRNA: 3'- -CGCAcCaGUUGCCG--UACUACGGCA--CG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 49115 | 0.66 | 0.988429 |
Target: 5'- cGCGUGGUgAccGCGGCGcc--GCUGcUGCg -3' miRNA: 3'- -CGCACCAgU--UGCCGUacuaCGGC-ACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 46181 | 0.74 | 0.757245 |
Target: 5'- -aGUGGUgAugGGCugcacggugcUGGUGUCGUGCg -3' miRNA: 3'- cgCACCAgUugCCGu---------ACUACGGCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 43470 | 0.67 | 0.983566 |
Target: 5'- aGCG-GGcCAgcGCGGCg----GCCGUGCu -3' miRNA: 3'- -CGCaCCaGU--UGCCGuacuaCGGCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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