Results 101 - 116 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14035 | 3' | -53.6 | NC_003521.1 | + | 196392 | 0.71 | 0.894863 |
Target: 5'- uGCGUGGUgaagggCGGCGGCAgguagagcagguUGuagGCCGUGa -3' miRNA: 3'- -CGCACCA------GUUGCCGU------------ACua-CGGCACg -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 111596 | 0.7 | 0.907355 |
Target: 5'- cGCGUGGcCAGCGGCGccgGAcUGCCcaccacGCg -3' miRNA: 3'- -CGCACCaGUUGCCGUa--CU-ACGGca----CG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 33908 | 0.7 | 0.907355 |
Target: 5'- uGCaUGGUCAacGCGGUgaucuucacaugGUGcUGCUGUGCg -3' miRNA: 3'- -CGcACCAGU--UGCCG------------UACuACGGCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 139756 | 0.69 | 0.952264 |
Target: 5'- cGCGUGc-CGACGGCAgGAUccgGCCGUcgGCg -3' miRNA: 3'- -CGCACcaGUUGCCGUaCUA---CGGCA--CG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 122727 | 0.69 | 0.952264 |
Target: 5'- uCGUGGUCGugGGCGacGgcGCCGccgaugGCu -3' miRNA: 3'- cGCACCAGUugCCGUa-CuaCGGCa-----CG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 196464 | 0.69 | 0.952264 |
Target: 5'- gGCGUGGgccgCAGCcccagcGCGUcgcgGAUGCgGUGCa -3' miRNA: 3'- -CGCACCa---GUUGc-----CGUA----CUACGgCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 97047 | 0.69 | 0.943883 |
Target: 5'- aCGU--UCAugGGCGUGAUGUCGaagugGCa -3' miRNA: 3'- cGCAccAGUugCCGUACUACGGCa----CG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 183973 | 0.69 | 0.939354 |
Target: 5'- cCGUGGgCuuCGaCAaGAUGCCGUGCu -3' miRNA: 3'- cGCACCaGuuGCcGUaCUACGGCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 17792 | 0.69 | 0.939354 |
Target: 5'- ---aGGcCGuCGGCGUGcugGCCGUGCg -3' miRNA: 3'- cgcaCCaGUuGCCGUACua-CGGCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 177525 | 0.69 | 0.939354 |
Target: 5'- -gGUGGUUGAUGGCGUGGaucagcaGCUGcUGCa -3' miRNA: 3'- cgCACCAGUUGCCGUACUa------CGGC-ACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 108451 | 0.69 | 0.934596 |
Target: 5'- cGCG-GGUguGCGGCGUGccGCUGauacccUGCa -3' miRNA: 3'- -CGCaCCAguUGCCGUACuaCGGC------ACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 205774 | 0.7 | 0.92439 |
Target: 5'- uGUGUGGUgGcgccgcACGGCAUGAg--CGUGCc -3' miRNA: 3'- -CGCACCAgU------UGCCGUACUacgGCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 22353 | 0.7 | 0.918941 |
Target: 5'- cCGgGGcCAcugcgcccACGGCGUGGUGCCG-GCc -3' miRNA: 3'- cGCaCCaGU--------UGCCGUACUACGGCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 98218 | 0.7 | 0.918941 |
Target: 5'- gGCG-GG-CAGCGGCGUGGgagGCgGggagGCg -3' miRNA: 3'- -CGCaCCaGUUGCCGUACUa--CGgCa---CG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 119262 | 0.7 | 0.913262 |
Target: 5'- cGCGUGGUCAAgauGCAggUGGUGgCCGaGCa -3' miRNA: 3'- -CGCACCAGUUgc-CGU--ACUAC-GGCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 163816 | 1.13 | 0.004681 |
Target: 5'- gGCGUGGUCAACGGCAUGAUGCCGUGCc -3' miRNA: 3'- -CGCACCAGUUGCCGUACUACGGCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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