miRNA display CGI


Results 101 - 116 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 3' -53.6 NC_003521.1 + 232575 0.66 0.986797
Target:  5'- uGUGUGGUgAGCGGggggcgaCAUGcguacGUCGUGCu -3'
miRNA:   3'- -CGCACCAgUUGCC-------GUACua---CGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 49115 0.66 0.988429
Target:  5'- cGCGUGGUgAccGCGGCGcc--GCUGcUGCg -3'
miRNA:   3'- -CGCACCAgU--UGCCGUacuaCGGC-ACG- -5'
14035 3' -53.6 NC_003521.1 + 101054 0.67 0.983566
Target:  5'- gGCGgccGcCGACGGCcgGAuccUGCCGUcgGCa -3'
miRNA:   3'- -CGCac-CaGUUGCCGuaCU---ACGGCA--CG- -5'
14035 3' -53.6 NC_003521.1 + 130128 0.68 0.95976
Target:  5'- uGCGUcGUCGGCGGCGcc--GCCGcUGCc -3'
miRNA:   3'- -CGCAcCAGUUGCCGUacuaCGGC-ACG- -5'
14035 3' -53.6 NC_003521.1 + 154538 0.68 0.95976
Target:  5'- uGCGUGaUCAcCGGCAccacggUGAUcGCCGcGCa -3'
miRNA:   3'- -CGCACcAGUuGCCGU------ACUA-CGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 88068 0.68 0.963186
Target:  5'- cGCgGUGGUCGGCGGCGc----CCGUGa -3'
miRNA:   3'- -CG-CACCAGUUGCCGUacuacGGCACg -5'
14035 3' -53.6 NC_003521.1 + 224434 0.68 0.968534
Target:  5'- uGCGUGGUgGGCGaGCGguccaggugcgucuUGAcgaUGaCCGUGUa -3'
miRNA:   3'- -CGCACCAgUUGC-CGU--------------ACU---AC-GGCACG- -5'
14035 3' -53.6 NC_003521.1 + 214171 0.68 0.969417
Target:  5'- gGCuUGGUCGACgGGCAguucGGUGgcaaCGUGCc -3'
miRNA:   3'- -CGcACCAGUUG-CCGUa---CUACg---GCACG- -5'
14035 3' -53.6 NC_003521.1 + 178640 0.67 0.974856
Target:  5'- uGCGUcGUUGGCGGUc-GAUGCCGUcuugGCg -3'
miRNA:   3'- -CGCAcCAGUUGCCGuaCUACGGCA----CG- -5'
14035 3' -53.6 NC_003521.1 + 85471 0.67 0.977294
Target:  5'- -gGUGGUCGu---CGUGGUGCCgGUGCc -3'
miRNA:   3'- cgCACCAGUugccGUACUACGG-CACG- -5'
14035 3' -53.6 NC_003521.1 + 115256 0.67 0.981642
Target:  5'- cCGUGGUCGGgGGCAgcAUGcCCGUc- -3'
miRNA:   3'- cGCACCAGUUgCCGUacUAC-GGCAcg -5'
14035 3' -53.6 NC_003521.1 + 126272 0.67 0.981642
Target:  5'- aCGUGGUaCGugGuGC-UGAUGUCGcGCu -3'
miRNA:   3'- cGCACCA-GUugC-CGuACUACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 213960 0.67 0.981642
Target:  5'- cGgGUGGgCGcCGGCucgg-GCCGUGCu -3'
miRNA:   3'- -CgCACCaGUuGCCGuacuaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 147823 0.67 0.981642
Target:  5'- uCGUGcGg-AACuGCAcGGUGCCGUGCa -3'
miRNA:   3'- cGCAC-CagUUGcCGUaCUACGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 43470 0.67 0.983566
Target:  5'- aGCG-GGcCAgcGCGGCg----GCCGUGCu -3'
miRNA:   3'- -CGCaCCaGU--UGCCGuacuaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 226367 0.66 0.992094
Target:  5'- cGCG-GGagCGGCGGC-UGAcGCCGccGCa -3'
miRNA:   3'- -CGCaCCa-GUUGCCGuACUaCGGCa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.