miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 3' -53.6 NC_003521.1 + 163816 1.13 0.004681
Target:  5'- gGCGUGGUCAACGGCAUGAUGCCGUGCc -3'
miRNA:   3'- -CGCACCAGUUGCCGUACUACGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 128464 0.79 0.491903
Target:  5'- gGCGgaucacguccaUGGgCAGCGGCGUGAgGCUGUGCg -3'
miRNA:   3'- -CGC-----------ACCaGUUGCCGUACUaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 198801 0.79 0.510859
Target:  5'- uGCGUGGUgcCGGCGGCGUc-UGUCGUGCc -3'
miRNA:   3'- -CGCACCA--GUUGCCGUAcuACGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 155401 0.78 0.549625
Target:  5'- uGCGUGGUCAACGaGCGcgccuaccagGA-GCUGUGCg -3'
miRNA:   3'- -CGCACCAGUUGC-CGUa---------CUaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 105938 0.76 0.639408
Target:  5'- cGUGUGGcCGGCGcGgAUGAUGaCCGUGUg -3'
miRNA:   3'- -CGCACCaGUUGC-CgUACUAC-GGCACG- -5'
14035 3' -53.6 NC_003521.1 + 196952 0.75 0.679471
Target:  5'- aGCGUGGgCGACGGCccggGAgccgGCCGggGCg -3'
miRNA:   3'- -CGCACCaGUUGCCGua--CUa---CGGCa-CG- -5'
14035 3' -53.6 NC_003521.1 + 172072 0.75 0.689414
Target:  5'- uGCGUcaGGaccgucagCGGCGGCGUGAUGaaguCCGUGCg -3'
miRNA:   3'- -CGCA--CCa-------GUUGCCGUACUAC----GGCACG- -5'
14035 3' -53.6 NC_003521.1 + 228740 0.75 0.689414
Target:  5'- uGCGUGGUgagCAGCGGCGUGcgcaucuUGUCG-GCg -3'
miRNA:   3'- -CGCACCA---GUUGCCGUACu------ACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 145041 0.75 0.72864
Target:  5'- cGCGUGGcCgAGCGGCAcGAUGaCCGUcuggGCg -3'
miRNA:   3'- -CGCACCaG-UUGCCGUaCUAC-GGCA----CG- -5'
14035 3' -53.6 NC_003521.1 + 217392 0.74 0.751594
Target:  5'- cCGUGGgCAccgccaggcugagcgGCGGCAUGAaGCCgGUGCa -3'
miRNA:   3'- cGCACCaGU---------------UGCCGUACUaCGG-CACG- -5'
14035 3' -53.6 NC_003521.1 + 46181 0.74 0.757245
Target:  5'- -aGUGGUgAugGGCugcacggugcUGGUGUCGUGCg -3'
miRNA:   3'- cgCACCAgUugCCGu---------ACUACGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 127323 0.74 0.766579
Target:  5'- gGCGuUGGUCAGCGGC----UGCCGgucgGCc -3'
miRNA:   3'- -CGC-ACCAGUUGCCGuacuACGGCa---CG- -5'
14035 3' -53.6 NC_003521.1 + 40419 0.74 0.767506
Target:  5'- gGCGUGcagggaggccgaagCGGCGGCcgGA-GCCGUGCa -3'
miRNA:   3'- -CGCACca------------GUUGCCGuaCUaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 240646 0.74 0.767506
Target:  5'- gGCGUGcagggaggccgaagCGGCGGCcgGA-GCCGUGCa -3'
miRNA:   3'- -CGCACca------------GUUGCCGuaCUaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 97 0.74 0.767506
Target:  5'- gGCGUGcagggaggccgaagCGGCGGCcgGA-GCCGUGCa -3'
miRNA:   3'- -CGCACca------------GUUGCCGuaCUaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 210429 0.74 0.775798
Target:  5'- gGCGUGGgcggCGACGGCAgcGUaCUGUGCu -3'
miRNA:   3'- -CGCACCa---GUUGCCGUacUAcGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 137997 0.74 0.775798
Target:  5'- cGCGcaGGUCGAucuCGGCGUcgaGGUGCgCGUGCg -3'
miRNA:   3'- -CGCa-CCAGUU---GCCGUA---CUACG-GCACG- -5'
14035 3' -53.6 NC_003521.1 + 18319 0.73 0.784892
Target:  5'- uCGUGccCAGCGGCGUGGUGCUGUu- -3'
miRNA:   3'- cGCACcaGUUGCCGUACUACGGCAcg -5'
14035 3' -53.6 NC_003521.1 + 31700 0.73 0.793854
Target:  5'- -aGUGGggCGGCGGCAgcauGUGCgCGUGCu -3'
miRNA:   3'- cgCACCa-GUUGCCGUac--UACG-GCACG- -5'
14035 3' -53.6 NC_003521.1 + 124026 0.73 0.811348
Target:  5'- cGCgGUGcGUCAGCGGCugcuUGgcGuuGUGCu -3'
miRNA:   3'- -CG-CAC-CAGUUGCCGu---ACuaCggCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.