miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 3' -53.6 NC_003521.1 + 97 0.74 0.767506
Target:  5'- gGCGUGcagggaggccgaagCGGCGGCcgGA-GCCGUGCa -3'
miRNA:   3'- -CGCACca------------GUUGCCGuaCUaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 10432 0.69 0.943883
Target:  5'- cGCGUG-UCGGCGGUuguccGcgGCaCGUGCg -3'
miRNA:   3'- -CGCACcAGUUGCCGua---CuaCG-GCACG- -5'
14035 3' -53.6 NC_003521.1 + 16704 0.69 0.956121
Target:  5'- aUGUGGcaGACGcGCGUGAUGCgCG-GCg -3'
miRNA:   3'- cGCACCagUUGC-CGUACUACG-GCaCG- -5'
14035 3' -53.6 NC_003521.1 + 17145 0.68 0.963186
Target:  5'- -aGUGGUuccagCAGCGGCGcGAgGCCGagGCg -3'
miRNA:   3'- cgCACCA-----GUUGCCGUaCUaCGGCa-CG- -5'
14035 3' -53.6 NC_003521.1 + 17792 0.69 0.939354
Target:  5'- ---aGGcCGuCGGCGUGcugGCCGUGCg -3'
miRNA:   3'- cgcaCCaGUuGCCGUACua-CGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 18319 0.73 0.784892
Target:  5'- uCGUGccCAGCGGCGUGGUGCUGUu- -3'
miRNA:   3'- cGCACcaGUUGCCGUACUACGGCAcg -5'
14035 3' -53.6 NC_003521.1 + 19153 0.71 0.881486
Target:  5'- gGCGUGGUgAccgagagcACGGCGcUGGUGgccgaCGUGCa -3'
miRNA:   3'- -CGCACCAgU--------UGCCGU-ACUACg----GCACG- -5'
14035 3' -53.6 NC_003521.1 + 20381 0.67 0.977294
Target:  5'- cGUGUGG-CuGCGG-GUGuacGCCGUGCu -3'
miRNA:   3'- -CGCACCaGuUGCCgUACua-CGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 20648 0.68 0.963186
Target:  5'- cGCGcUGGUgGGCGccuaCGUGAUGaCCGUGg -3'
miRNA:   3'- -CGC-ACCAgUUGCc---GUACUAC-GGCACg -5'
14035 3' -53.6 NC_003521.1 + 22353 0.7 0.918941
Target:  5'- cCGgGGcCAcugcgcccACGGCGUGGUGCCG-GCc -3'
miRNA:   3'- cGCaCCaGU--------UGCCGUACUACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 28370 0.67 0.983566
Target:  5'- gGCcUGGUUGAUGGCGUG--GCaCGUGUc -3'
miRNA:   3'- -CGcACCAGUUGCCGUACuaCG-GCACG- -5'
14035 3' -53.6 NC_003521.1 + 28485 0.71 0.894863
Target:  5'- cGgGUGGUgAugGGCGUGAccGUCGgGCu -3'
miRNA:   3'- -CgCACCAgUugCCGUACUa-CGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 31700 0.73 0.793854
Target:  5'- -aGUGGggCGGCGGCAgcauGUGCgCGUGCu -3'
miRNA:   3'- cgCACCa-GUUGCCGUac--UACG-GCACG- -5'
14035 3' -53.6 NC_003521.1 + 33908 0.7 0.907355
Target:  5'- uGCaUGGUCAacGCGGUgaucuucacaugGUGcUGCUGUGCg -3'
miRNA:   3'- -CGcACCAGU--UGCCG------------UACuACGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 40419 0.74 0.767506
Target:  5'- gGCGUGcagggaggccgaagCGGCGGCcgGA-GCCGUGCa -3'
miRNA:   3'- -CGCACca------------GUUGCCGuaCUaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 41627 0.72 0.859831
Target:  5'- cCGUGGUCuGgGGCGUGgcGcCCGUGg -3'
miRNA:   3'- cGCACCAGuUgCCGUACuaC-GGCACg -5'
14035 3' -53.6 NC_003521.1 + 43470 0.67 0.983566
Target:  5'- aGCG-GGcCAgcGCGGCg----GCCGUGCu -3'
miRNA:   3'- -CGCaCCaGU--UGCCGuacuaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 46181 0.74 0.757245
Target:  5'- -aGUGGUgAugGGCugcacggugcUGGUGUCGUGCg -3'
miRNA:   3'- cgCACCAgUugCCGu---------ACUACGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 49115 0.66 0.988429
Target:  5'- cGCGUGGUgAccGCGGCGcc--GCUGcUGCg -3'
miRNA:   3'- -CGCACCAgU--UGCCGUacuaCGGC-ACG- -5'
14035 3' -53.6 NC_003521.1 + 53515 0.69 0.952264
Target:  5'- gGCGUcG-CAGCGGCcgAUGGUGCUGUccGCu -3'
miRNA:   3'- -CGCAcCaGUUGCCG--UACUACGGCA--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.