miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 3' -53.6 NC_003521.1 + 167041 0.66 0.987559
Target:  5'- aGCucgGG-CAGCGGCGUGGcgcucaugacgccggUGCCG-GCc -3'
miRNA:   3'- -CGca-CCaGUUGCCGUACU---------------ACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 228238 0.66 0.986952
Target:  5'- cGC-UGGUCGugGuGgGUGccGCCGUGg -3'
miRNA:   3'- -CGcACCAGUugC-CgUACuaCGGCACg -5'
14035 3' -53.6 NC_003521.1 + 176823 0.66 0.986952
Target:  5'- gGCGUGGUgAACGGUAaaugGCCcacuugGCa -3'
miRNA:   3'- -CGCACCAgUUGCCGUacuaCGGca----CG- -5'
14035 3' -53.6 NC_003521.1 + 84594 0.66 0.986952
Target:  5'- gGUGUGGUCGAccagcuCGGCGUcGGUGaCG-GCc -3'
miRNA:   3'- -CGCACCAGUU------GCCGUA-CUACgGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 166619 0.66 0.986952
Target:  5'- aCGUGGcagaaGACGGCGUcggGCCGcGCg -3'
miRNA:   3'- cGCACCag---UUGCCGUAcuaCGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 232575 0.66 0.986797
Target:  5'- uGUGUGGUgAGCGGggggcgaCAUGcguacGUCGUGCu -3'
miRNA:   3'- -CGCACCAgUUGCC-------GUACua---CGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 112096 0.66 0.985334
Target:  5'- gGCGccaaGaUCAGCGGCGUGAUGgUGaGCa -3'
miRNA:   3'- -CGCa---CcAGUUGCCGUACUACgGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 90826 0.66 0.985334
Target:  5'- gGCGUcGUCGuGCGGCG-GGUGCgcgccgccCGUGCu -3'
miRNA:   3'- -CGCAcCAGU-UGCCGUaCUACG--------GCACG- -5'
14035 3' -53.6 NC_003521.1 + 122660 0.67 0.983566
Target:  5'- gGCGUcGUCuGCGGCGguggGGUGgCGUcGCc -3'
miRNA:   3'- -CGCAcCAGuUGCCGUa---CUACgGCA-CG- -5'
14035 3' -53.6 NC_003521.1 + 28370 0.67 0.983566
Target:  5'- gGCcUGGUUGAUGGCGUG--GCaCGUGUc -3'
miRNA:   3'- -CGcACCAGUUGCCGUACuaCG-GCACG- -5'
14035 3' -53.6 NC_003521.1 + 43470 0.67 0.983566
Target:  5'- aGCG-GGcCAgcGCGGCg----GCCGUGCu -3'
miRNA:   3'- -CGCaCCaGU--UGCCGuacuaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 101054 0.67 0.983566
Target:  5'- gGCGgccGcCGACGGCcgGAuccUGCCGUcgGCa -3'
miRNA:   3'- -CGCac-CaGUUGCCGuaCU---ACGGCA--CG- -5'
14035 3' -53.6 NC_003521.1 + 180088 0.67 0.982431
Target:  5'- cGCGUcaccccguccagggaGGgCAGCGGCGUGGUGCgaccCGcGCc -3'
miRNA:   3'- -CGCA---------------CCaGUUGCCGUACUACG----GCaCG- -5'
14035 3' -53.6 NC_003521.1 + 164554 0.67 0.981642
Target:  5'- cGCGaGGUCuc--GCAgGcgGCCGUGCg -3'
miRNA:   3'- -CGCaCCAGuugcCGUaCuaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 115256 0.67 0.981642
Target:  5'- cCGUGGUCGGgGGCAgcAUGcCCGUc- -3'
miRNA:   3'- cGCACCAGUUgCCGUacUAC-GGCAcg -5'
14035 3' -53.6 NC_003521.1 + 126272 0.67 0.981642
Target:  5'- aCGUGGUaCGugGuGC-UGAUGUCGcGCu -3'
miRNA:   3'- cGCACCA-GUugC-CGuACUACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 213960 0.67 0.981642
Target:  5'- cGgGUGGgCGcCGGCucgg-GCCGUGCu -3'
miRNA:   3'- -CgCACCaGUuGCCGuacuaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 147823 0.67 0.981642
Target:  5'- uCGUGcGg-AACuGCAcGGUGCCGUGCa -3'
miRNA:   3'- cGCAC-CagUUGcCGUaCUACGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 112779 0.67 0.981642
Target:  5'- cGCGUcGGcCAcuucuaccgcguGCGGCGcgaGGUGCCGcGCa -3'
miRNA:   3'- -CGCA-CCaGU------------UGCCGUa--CUACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 107749 0.67 0.979554
Target:  5'- aGUGUGGcggcugCGAUGGCuGUGAcUGCUGcUGCu -3'
miRNA:   3'- -CGCACCa-----GUUGCCG-UACU-ACGGC-ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.