miRNA display CGI


Results 1 - 20 of 655 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 5' -59.1 NC_003521.1 + 7 0.69 0.725263
Target:  5'- uCCGCgCAGCgaguGUgGCGCGUGUUuGCCGUg -3'
miRNA:   3'- -GGCG-GUCG----UAgUGCGCGUAGcCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 1006 0.73 0.497501
Target:  5'- gCCGUaCGGCuucuaCGCGCGCAUCacGCCGCg -3'
miRNA:   3'- -GGCG-GUCGua---GUGCGCGUAGc-CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 1072 0.66 0.874077
Target:  5'- gCGCCAGCucUCGcCGCGCGaccccuggaUCGuGCUGg -3'
miRNA:   3'- gGCGGUCGu-AGU-GCGCGU---------AGC-CGGCg -5'
14035 5' -59.1 NC_003521.1 + 1317 0.67 0.829699
Target:  5'- gCGCCGGCG--ACGUgGCG-CGGCUGUa -3'
miRNA:   3'- gGCGGUCGUagUGCG-CGUaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 1455 0.71 0.620149
Target:  5'- gCCGCCgguGGCAgcaCACGgGCAUCccGCUGCa -3'
miRNA:   3'- -GGCGG---UCGUa--GUGCgCGUAGc-CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 4353 0.7 0.668361
Target:  5'- gCCGCCGGCGguuCGCuCAUCgcGGcCCGCg -3'
miRNA:   3'- -GGCGGUCGUaguGCGcGUAG--CC-GGCG- -5'
14035 5' -59.1 NC_003521.1 + 4648 0.69 0.752853
Target:  5'- aCGCCAGCGgaUCACGgGgGUUuccgaaacGCCGCa -3'
miRNA:   3'- gGCGGUCGU--AGUGCgCgUAGc-------CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 4676 0.66 0.874077
Target:  5'- cCCGCCGGCgacGUCGCGCG-GUCccccCCGUc -3'
miRNA:   3'- -GGCGGUCG---UAGUGCGCgUAGcc--GGCG- -5'
14035 5' -59.1 NC_003521.1 + 5521 0.66 0.893736
Target:  5'- gCCGUC-GCAUCuguCGuCGCcaGUUGGCgGCg -3'
miRNA:   3'- -GGCGGuCGUAGu--GC-GCG--UAGCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 9844 0.66 0.899886
Target:  5'- cCCGCUGGCGUCAUGauaGCAcccuUCGaGCUcccgagGCa -3'
miRNA:   3'- -GGCGGUCGUAGUGCg--CGU----AGC-CGG------CG- -5'
14035 5' -59.1 NC_003521.1 + 10411 0.7 0.715913
Target:  5'- gUCGCCccGCAUCucaaaaacCGCGUGUCGGCgGUu -3'
miRNA:   3'- -GGCGGu-CGUAGu-------GCGCGUAGCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 11856 0.71 0.658743
Target:  5'- cCUGCgAG-AUCAC-CGCAcgcucuUCGGCCGCa -3'
miRNA:   3'- -GGCGgUCgUAGUGcGCGU------AGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 12123 0.68 0.813564
Target:  5'- gCCGCCGcGCuccuUCGgGUGCggCGGCCu- -3'
miRNA:   3'- -GGCGGU-CGu---AGUgCGCGuaGCCGGcg -5'
14035 5' -59.1 NC_003521.1 + 12557 0.66 0.887382
Target:  5'- aCGCCgAGCGUCugGagaugcccggGCGUUGuCCGCa -3'
miRNA:   3'- gGCGG-UCGUAGugCg---------CGUAGCcGGCG- -5'
14035 5' -59.1 NC_003521.1 + 14726 0.7 0.69608
Target:  5'- aCGCCgugguaucuguugGGCGUgACGgGC--CGGCCGCg -3'
miRNA:   3'- gGCGG-------------UCGUAgUGCgCGuaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 15950 0.67 0.860002
Target:  5'- gCGCCaAGCAccuggacgacUgGCGCGCuaCGGCCuGCu -3'
miRNA:   3'- gGCGG-UCGU----------AgUGCGCGuaGCCGG-CG- -5'
14035 5' -59.1 NC_003521.1 + 16006 0.73 0.494781
Target:  5'- aCCGCCAGCcgCagacgcccuacgccACGCGCGUC--CCGCa -3'
miRNA:   3'- -GGCGGUCGuaG--------------UGCGCGUAGccGGCG- -5'
14035 5' -59.1 NC_003521.1 + 16072 0.67 0.829699
Target:  5'- aCUGCCGGagccccgACGCGC--UGGCCGCc -3'
miRNA:   3'- -GGCGGUCguag---UGCGCGuaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 16741 0.73 0.525044
Target:  5'- aCCGCCGGCG-CGCGCGCcc--GCCGg -3'
miRNA:   3'- -GGCGGUCGUaGUGCGCGuagcCGGCg -5'
14035 5' -59.1 NC_003521.1 + 16849 0.71 0.639456
Target:  5'- cUCGCCGGCgcaggcggacGUCuacgACGUGCGUuccccgCGGCCGCc -3'
miRNA:   3'- -GGCGGUCG----------UAG----UGCGCGUA------GCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.