miRNA display CGI


Results 1 - 20 of 655 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 5' -59.1 NC_003521.1 + 43837 0.74 0.444506
Target:  5'- gCCGCCGGCcgcgggcccGUCACagGCGCccCGGCCGg -3'
miRNA:   3'- -GGCGGUCG---------UAGUG--CGCGuaGCCGGCg -5'
14035 5' -59.1 NC_003521.1 + 33239 0.75 0.410988
Target:  5'- -aGCCGGCGUugagcuggcaCACGCGCAgcaGGCCGg -3'
miRNA:   3'- ggCGGUCGUA----------GUGCGCGUag-CCGGCg -5'
14035 5' -59.1 NC_003521.1 + 192038 0.75 0.410988
Target:  5'- aCCGCCGGCGUgCGCG-GCAgacgCGGCgucCGCg -3'
miRNA:   3'- -GGCGGUCGUA-GUGCgCGUa---GCCG---GCG- -5'
14035 5' -59.1 NC_003521.1 + 116853 0.75 0.419221
Target:  5'- gCCGCCGaccGCGacgaccugCGCGCGCAguggcgCGGCUGCg -3'
miRNA:   3'- -GGCGGU---CGUa-------GUGCGCGUa-----GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 30228 0.75 0.427553
Target:  5'- gCCGUUGGCGUCGCGCuGCAgguccgcgCGGuuGCc -3'
miRNA:   3'- -GGCGGUCGUAGUGCG-CGUa-------GCCggCG- -5'
14035 5' -59.1 NC_003521.1 + 153107 0.75 0.427553
Target:  5'- gCCGCCGGg--CGCGCGCGaCGGCaGCa -3'
miRNA:   3'- -GGCGGUCguaGUGCGCGUaGCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 145714 0.75 0.435982
Target:  5'- -gGCCAcGCucaaGCGCGCG-CGGCCGCu -3'
miRNA:   3'- ggCGGU-CGuag-UGCGCGUaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 115383 0.75 0.435982
Target:  5'- -gGCCGGCAUgugcaGgGCGCGggCGGCCGCc -3'
miRNA:   3'- ggCGGUCGUAg----UgCGCGUa-GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 224080 0.74 0.444506
Target:  5'- uCCuCCGGCGggCGCGCGCGccggCGGUCGCc -3'
miRNA:   3'- -GGcGGUCGUa-GUGCGCGUa---GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 216820 0.75 0.394828
Target:  5'- aCGCCGG-AUgGCGCGCAggaGGUCGCa -3'
miRNA:   3'- gGCGGUCgUAgUGCGCGUag-CCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 70743 0.75 0.394828
Target:  5'- uUCGuCCAGCugcaGCGCGCcgCGGCCGa -3'
miRNA:   3'- -GGC-GGUCGuag-UGCGCGuaGCCGGCg -5'
14035 5' -59.1 NC_003521.1 + 225589 0.76 0.386903
Target:  5'- gCGCuCGGCGgccuCGCGC-UCGGCCGCc -3'
miRNA:   3'- gGCG-GUCGUagu-GCGCGuAGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 56797 0.85 0.114618
Target:  5'- gCCGCCcaaccGGCGUCGCGCGCGaacgagUCGGCCGa -3'
miRNA:   3'- -GGCGG-----UCGUAGUGCGCGU------AGCCGGCg -5'
14035 5' -59.1 NC_003521.1 + 224115 0.83 0.149966
Target:  5'- cUCGCCGcGCAUCACGCGCGUCuGCCa- -3'
miRNA:   3'- -GGCGGU-CGUAGUGCGCGUAGcCGGcg -5'
14035 5' -59.1 NC_003521.1 + 165662 0.8 0.227829
Target:  5'- gCCGCgCGGCAcCAUGCGUccaggcauccccagGUCGGCCGCc -3'
miRNA:   3'- -GGCG-GUCGUaGUGCGCG--------------UAGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 168970 0.78 0.281093
Target:  5'- cCCGCU-GCuGUCgccgACGCGCGUCGGUCGCg -3'
miRNA:   3'- -GGCGGuCG-UAG----UGCGCGUAGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 133377 0.78 0.300268
Target:  5'- uCCGCCGGCA-CA-GCGCggCGGuCCGCg -3'
miRNA:   3'- -GGCGGUCGUaGUgCGCGuaGCC-GGCG- -5'
14035 5' -59.1 NC_003521.1 + 118187 0.77 0.33444
Target:  5'- cCCGCCGGCAaagUCGgggccgccgaGCGCG-CGGCCGCc -3'
miRNA:   3'- -GGCGGUCGU---AGUg---------CGCGUaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 110652 0.77 0.339445
Target:  5'- gCGCCGGCAcggUCACggcccggucggccaGCGCGUCGGUgGCc -3'
miRNA:   3'- gGCGGUCGU---AGUG--------------CGCGUAGCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 123875 0.76 0.354043
Target:  5'- cCCGCCguucucuccucggaAGCuGUCGCGUGCuGUCGGCgCGCg -3'
miRNA:   3'- -GGCGG--------------UCG-UAGUGCGCG-UAGCCG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.