miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14038 3' -54.9 NC_003521.1 + 71246 0.68 0.943108
Target:  5'- -uGCAGUauuagcaaCGUgACGGaGAACGGGGAg -3'
miRNA:   3'- ugUGUCAga------GUAgUGCC-CUUGCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 170522 0.68 0.938575
Target:  5'- -gACGG-CgUGUgACGGGGACGGGGGg -3'
miRNA:   3'- ugUGUCaGaGUAgUGCCCUUGCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 217641 0.68 0.933818
Target:  5'- gGCGUGGUCggggggCAUgGCGGGAucCGGGGGu -3'
miRNA:   3'- -UGUGUCAGa-----GUAgUGCCCUu-GCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 187876 0.68 0.933818
Target:  5'- -gGCGGUCaccaccUCGggcggCACGGGcGGCGGGGGc -3'
miRNA:   3'- ugUGUCAG------AGUa----GUGCCC-UUGCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 138648 0.69 0.918184
Target:  5'- aACGC-GUCgUCAUCAaGGGAgACGGGGc -3'
miRNA:   3'- -UGUGuCAG-AGUAGUgCCCU-UGCCCCu -5'
14038 3' -54.9 NC_003521.1 + 13472 0.69 0.918184
Target:  5'- aGCGCcGUCgacgGUCugGGcGACGGGGAa -3'
miRNA:   3'- -UGUGuCAGag--UAGugCCcUUGCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 212869 0.69 0.906631
Target:  5'- gUAUGGUCgUCGUCguggacGCGGGcGACGGGGGu -3'
miRNA:   3'- uGUGUCAG-AGUAG------UGCCC-UUGCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 155631 0.69 0.894187
Target:  5'- gACGCAGUgUCGUaCGCGaccgagcaaGGGACGGGcGAu -3'
miRNA:   3'- -UGUGUCAgAGUA-GUGC---------CCUUGCCC-CU- -5'
14038 3' -54.9 NC_003521.1 + 10195 0.7 0.887637
Target:  5'- uACACcGUUUUAaugaCACGGGGAgGGGGGa -3'
miRNA:   3'- -UGUGuCAGAGUa---GUGCCCUUgCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 162885 0.7 0.873191
Target:  5'- -aGCAGggCUUcauguccaucgauAUCACGGGuGACGGGGAc -3'
miRNA:   3'- ugUGUCa-GAG-------------UAGUGCCC-UUGCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 177161 0.7 0.86672
Target:  5'- cACACGaagCUCugguUCACGGGcACGGGGu -3'
miRNA:   3'- -UGUGUca-GAGu---AGUGCCCuUGCCCCu -5'
14038 3' -54.9 NC_003521.1 + 112307 0.7 0.858592
Target:  5'- uUAUAGUCggcacgaugcCAUCACGGGAcccgacgGCGGGGu -3'
miRNA:   3'- uGUGUCAGa---------GUAGUGCCCU-------UGCCCCu -5'
14038 3' -54.9 NC_003521.1 + 168985 0.71 0.851766
Target:  5'- gACGCGcGUCg-GUCGCGGGAGgCGGGcGAc -3'
miRNA:   3'- -UGUGU-CAGagUAGUGCCCUU-GCCC-CU- -5'
14038 3' -54.9 NC_003521.1 + 109452 0.73 0.757516
Target:  5'- gGCACGGUCUCGggUAUGGGcGCGucuGGGAa -3'
miRNA:   3'- -UGUGUCAGAGUa-GUGCCCuUGC---CCCU- -5'
14038 3' -54.9 NC_003521.1 + 139246 0.76 0.561296
Target:  5'- gUACGGggCUCcUCGCGcGGAGCGGGGGg -3'
miRNA:   3'- uGUGUCa-GAGuAGUGC-CCUUGCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 193164 0.76 0.551523
Target:  5'- cGCACAGcaUCUCAggagCcgGCGGGAGCGGcGGAg -3'
miRNA:   3'- -UGUGUC--AGAGUa---G--UGCCCUUGCC-CCU- -5'
14038 3' -54.9 NC_003521.1 + 24033 0.78 0.448527
Target:  5'- gACGCGG-CUCcuggcgugAUCACGGGAGgGGGGAa -3'
miRNA:   3'- -UGUGUCaGAG--------UAGUGCCCUUgCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 162287 1.09 0.006248
Target:  5'- gACACAGUCUCAUCACGGGAACGGGGAg -3'
miRNA:   3'- -UGUGUCAGAGUAGUGCCCUUGCCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.