miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14038 5' -58.8 NC_003521.1 + 25530 0.66 0.862745
Target:  5'- ---aCCUGCcg-CCGCuGGCGGUGGCc -3'
miRNA:   3'- uaagGGAUGaugGGCGuCCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 127145 0.66 0.862745
Target:  5'- -gUCCCa---GCCCGCAGGC-GCGGu -3'
miRNA:   3'- uaAGGGaugaUGGGCGUCCGcCGCUg -5'
14038 5' -58.8 NC_003521.1 + 237165 0.66 0.862745
Target:  5'- -gUCCCgGCcGCCgagGCAgacGGCGGCGGCc -3'
miRNA:   3'- uaAGGGaUGaUGGg--CGU---CCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 91636 0.66 0.862745
Target:  5'- --gUCCUcgUGgCCGCcGGUGGCGACg -3'
miRNA:   3'- uaaGGGAugAUgGGCGuCCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 123057 0.66 0.855334
Target:  5'- --aCCaUGCUGCUgGgAcGGCGGCGGCg -3'
miRNA:   3'- uaaGGgAUGAUGGgCgU-CCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 145239 0.67 0.843088
Target:  5'- --gCCUUcgugagcgGCUGCCUGCAGGgcgccuccucggccuCGGCGGCc -3'
miRNA:   3'- uaaGGGA--------UGAUGGGCGUCC---------------GCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 236461 0.67 0.839955
Target:  5'- ---aCCUGCUcGgCCGCAaGCGGCGAa -3'
miRNA:   3'- uaagGGAUGA-UgGGCGUcCGCCGCUg -5'
14038 5' -58.8 NC_003521.1 + 59622 0.67 0.839955
Target:  5'- --cCCCggcgGCgaccgcgGCUCGCAGGCGuugguGCGGCa -3'
miRNA:   3'- uaaGGGa---UGa------UGGGCGUCCGC-----CGCUG- -5'
14038 5' -58.8 NC_003521.1 + 135758 0.67 0.839955
Target:  5'- cGUUCCCggga--CCGaAGGCGGUGGCg -3'
miRNA:   3'- -UAAGGGaugaugGGCgUCCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 156889 0.67 0.839955
Target:  5'- ---gCC-GCUGCCCGauggcaCGGGgGGCGACg -3'
miRNA:   3'- uaagGGaUGAUGGGC------GUCCgCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 6395 0.67 0.831998
Target:  5'- --gCCgCaGCUA-CCGC-GGCGGCGACg -3'
miRNA:   3'- uaaGG-GaUGAUgGGCGuCCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 131063 0.67 0.831998
Target:  5'- --cCUCUGg-ACgCGguGGCGGCGACc -3'
miRNA:   3'- uaaGGGAUgaUGgGCguCCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 98449 0.67 0.831998
Target:  5'- -cUCCUggGCUACguuggaGgAGGCGGCGGCg -3'
miRNA:   3'- uaAGGGa-UGAUGgg----CgUCCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 91761 0.67 0.829578
Target:  5'- --aCCCUACcccgcggguCCCGCauccccccacacccGGGCGGCGGu -3'
miRNA:   3'- uaaGGGAUGau-------GGGCG--------------UCCGCCGCUg -5'
14038 5' -58.8 NC_003521.1 + 155493 0.67 0.827142
Target:  5'- ---gCCUGCggcgGgCCGCGGGCcaaggcuggagcgacGGCGACg -3'
miRNA:   3'- uaagGGAUGa---UgGGCGUCCG---------------CCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 71301 0.67 0.823872
Target:  5'- --cCCCUGggGCaCCaGCaccugGGGCGGCGGCg -3'
miRNA:   3'- uaaGGGAUgaUG-GG-CG-----UCCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 162897 0.67 0.823872
Target:  5'- --gCCgCUACUGCCUGCAGGaCGcccuguuggugcGCGAUc -3'
miRNA:   3'- uaaGG-GAUGAUGGGCGUCC-GC------------CGCUG- -5'
14038 5' -58.8 NC_003521.1 + 170754 0.67 0.823872
Target:  5'- --aCCCgcuguacgUGCUgGCCCGaCAGGCGGUgcaGACg -3'
miRNA:   3'- uaaGGG--------AUGA-UGGGC-GUCCGCCG---CUG- -5'
14038 5' -58.8 NC_003521.1 + 111496 0.67 0.823872
Target:  5'- cUUCCUg---ACCaGCGGGCuGGCGGCg -3'
miRNA:   3'- uAAGGGaugaUGGgCGUCCG-CCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 184834 0.67 0.823872
Target:  5'- gAUUCCC-GCUACUCGCGccGCuGCGACu -3'
miRNA:   3'- -UAAGGGaUGAUGGGCGUc-CGcCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.