Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1405 | 3' | -54.3 | NC_001335.1 | + | 26641 | 0.66 | 0.79114 |
Target: 5'- --cGGCuGAUCCGCGUGGaGcgCGAg -3' miRNA: 3'- ccuCUGuCUAGGUGCACCcCuaGCUg -5' |
|||||||
1405 | 3' | -54.3 | NC_001335.1 | + | 6712 | 0.66 | 0.761029 |
Target: 5'- gGGAGACGGGgcaagcUCCGgGUGGuGGuuGUUGAg -3' miRNA: 3'- -CCUCUGUCU------AGGUgCACC-CC--UAGCUg -5' |
|||||||
1405 | 3' | -54.3 | NC_001335.1 | + | 43507 | 0.67 | 0.68667 |
Target: 5'- uGGAG-CAGGUagagaaguucaUCGCGUGGcGGAagGACa -3' miRNA: 3'- -CCUCuGUCUA-----------GGUGCACC-CCUagCUG- -5' |
|||||||
1405 | 3' | -54.3 | NC_001335.1 | + | 41697 | 1.13 | 0.000707 |
Target: 5'- cGGAGACAGAUCCACGUGGGGAUCGACg -3' miRNA: 3'- -CCUCUGUCUAGGUGCACCCCUAGCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home