miRNA display CGI


Results 21 - 40 of 236 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14050 5' -52.3 NC_003521.1 + 45421 0.66 0.995782
Target:  5'- aGCCGGUGcCcGCcgucggcGCGGUCAUGGCCUc -3'
miRNA:   3'- -UGGUCGCuGaUGu------UGCUAGUGCUGGA- -5'
14050 5' -52.3 NC_003521.1 + 215109 0.66 0.995718
Target:  5'- aGCCuucgcggAGCGAg-AUGACGAUCAgGGCCg -3'
miRNA:   3'- -UGG-------UCGCUgaUGUUGCUAGUgCUGGa -5'
14050 5' -52.3 NC_003521.1 + 154805 0.66 0.995104
Target:  5'- gUCAGCucgUugGGCGGUCACGACUa -3'
miRNA:   3'- uGGUCGcugAugUUGCUAGUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 139441 0.66 0.995104
Target:  5'- gGCCgucaAGCGGC-GCGACGGcUCGCGcACCc -3'
miRNA:   3'- -UGG----UCGCUGaUGUUGCU-AGUGC-UGGa -5'
14050 5' -52.3 NC_003521.1 + 130449 0.66 0.995104
Target:  5'- uACgGGCGACgauCGACGA-CGCG-CCa -3'
miRNA:   3'- -UGgUCGCUGau-GUUGCUaGUGCuGGa -5'
14050 5' -52.3 NC_003521.1 + 48011 0.66 0.995104
Target:  5'- gGCUucuGCGGCUGCugccAGCGAUC-CGACa- -3'
miRNA:   3'- -UGGu--CGCUGAUG----UUGCUAGuGCUGga -5'
14050 5' -52.3 NC_003521.1 + 84068 0.66 0.995104
Target:  5'- gGCCc-UGGCUcuugGCGAUGGUCAUGGCCg -3'
miRNA:   3'- -UGGucGCUGA----UGUUGCUAGUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 78151 0.66 0.995104
Target:  5'- -gCGGCGGCcGCgAACGAggCACGAuCCUg -3'
miRNA:   3'- ugGUCGCUGaUG-UUGCUa-GUGCU-GGA- -5'
14050 5' -52.3 NC_003521.1 + 190286 0.66 0.995104
Target:  5'- cGCCuGCGAuaCUGCcGCGAacccCGCGGCCc -3'
miRNA:   3'- -UGGuCGCU--GAUGuUGCUa---GUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 118279 0.66 0.995104
Target:  5'- cACCAGCGGCgguaGCAGCag-CACuACCa -3'
miRNA:   3'- -UGGUCGCUGa---UGUUGcuaGUGcUGGa -5'
14050 5' -52.3 NC_003521.1 + 70140 0.66 0.995104
Target:  5'- gGCCu-CGAgCUGCGGCGAgCGCGGCUg -3'
miRNA:   3'- -UGGucGCU-GAUGUUGCUaGUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 118093 0.66 0.995104
Target:  5'- cUCGGCGGCgccguCGcccACGAcCACGACCg -3'
miRNA:   3'- uGGUCGCUGau---GU---UGCUaGUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 196331 0.66 0.995104
Target:  5'- -aCGGCGGCUGCAGCucGAUuuccagCGCGugCa -3'
miRNA:   3'- ugGUCGCUGAUGUUG--CUA------GUGCugGa -5'
14050 5' -52.3 NC_003521.1 + 16851 0.66 0.995104
Target:  5'- cGCCGGCGcaggcggacguCUACGACGugcguucccCGCGGCCg -3'
miRNA:   3'- -UGGUCGCu----------GAUGUUGCua-------GUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 6521 0.66 0.994339
Target:  5'- cACCGGUGACgAgGGCGGUCuGCGuCCc -3'
miRNA:   3'- -UGGUCGCUGaUgUUGCUAG-UGCuGGa -5'
14050 5' -52.3 NC_003521.1 + 98250 0.66 0.994339
Target:  5'- --gGGCGGCcACGGCGggCACGGCg- -3'
miRNA:   3'- uggUCGCUGaUGUUGCuaGUGCUGga -5'
14050 5' -52.3 NC_003521.1 + 137285 0.66 0.994339
Target:  5'- cCCAGCGACcuggaGCuGCGGguggCGCGGCUg -3'
miRNA:   3'- uGGUCGCUGa----UGuUGCUa---GUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 117055 0.66 0.994339
Target:  5'- cGCCcgaGGCGGCcGCGgagccgGCGGUCACG-CCg -3'
miRNA:   3'- -UGG---UCGCUGaUGU------UGCUAGUGCuGGa -5'
14050 5' -52.3 NC_003521.1 + 193515 0.66 0.994339
Target:  5'- cGCaCAGCGGCUgagACGACGgAUCGgacgGACCUu -3'
miRNA:   3'- -UG-GUCGCUGA---UGUUGC-UAGUg---CUGGA- -5'
14050 5' -52.3 NC_003521.1 + 149740 0.66 0.994339
Target:  5'- gACgAGUGGCaggucuucUGCGGCGAggGCGGCCg -3'
miRNA:   3'- -UGgUCGCUG--------AUGUUGCUagUGCUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.