miRNA display CGI


Results 81 - 100 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14058 5' -67.6 NC_003521.1 + 238828 0.68 0.39232
Target:  5'- gUGUCCCUGGguguucGCCGuaugcguuauuagaGGCgCGCCGGCUg -3'
miRNA:   3'- aACAGGGGCU------CGGC--------------CCG-GCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 224299 0.68 0.387024
Target:  5'- -gGUCCguugcgcuccagCCGAGCCGaGcGCCGCa-GCCCg -3'
miRNA:   3'- aaCAGG------------GGCUCGGC-C-CGGCGgcCGGG- -5'
14058 5' -67.6 NC_003521.1 + 226076 0.68 0.379542
Target:  5'- -cG-CCCCG-GCC--GCgGCCGGCCCg -3'
miRNA:   3'- aaCaGGGGCuCGGccCGgCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 43860 0.68 0.379542
Target:  5'- -aGgcgCCCCGGccggcucCCGGGCCGUC-GCCCa -3'
miRNA:   3'- aaCa--GGGGCUc------GGCCCGGCGGcCGGG- -5'
14058 5' -67.6 NC_003521.1 + 201610 0.68 0.379542
Target:  5'- cUGUCCCCGAGCCcGcGCUGCUGcggacGCUg -3'
miRNA:   3'- aACAGGGGCUCGGcC-CGGCGGC-----CGGg -5'
14058 5' -67.6 NC_003521.1 + 179454 0.68 0.379542
Target:  5'- -gGUCCuuGAGCuguugcaggaagCGGGCCGUgGGCa- -3'
miRNA:   3'- aaCAGGggCUCG------------GCCCGGCGgCCGgg -5'
14058 5' -67.6 NC_003521.1 + 35604 0.68 0.387024
Target:  5'- -gGUCCCCuGAuCCGc-CUGCCGGCCCu -3'
miRNA:   3'- aaCAGGGG-CUcGGCccGGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 48366 0.68 0.402278
Target:  5'- -cGUCCUgGAaaCCGGcGCCGCCGccauGCCCc -3'
miRNA:   3'- aaCAGGGgCUc-GGCC-CGGCGGC----CGGG- -5'
14058 5' -67.6 NC_003521.1 + 158051 0.68 0.402278
Target:  5'- -cGUCCCUGuGCUccacGGcCCGCCGGUCg -3'
miRNA:   3'- aaCAGGGGCuCGGc---CC-GGCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 209817 0.68 0.410047
Target:  5'- -cGUCCUC--GCCGGcGCCGUCGucGCCCc -3'
miRNA:   3'- aaCAGGGGcuCGGCC-CGGCGGC--CGGG- -5'
14058 5' -67.6 NC_003521.1 + 223315 0.68 0.417908
Target:  5'- -cG-CCgCCGGGCCGGGaaCCGCCGuGaCCg -3'
miRNA:   3'- aaCaGG-GGCUCGGCCC--GGCGGC-CgGG- -5'
14058 5' -67.6 NC_003521.1 + 154426 0.68 0.379542
Target:  5'- -cGUcCCCCGcGUCGa-CCGCUGGCCCu -3'
miRNA:   3'- aaCA-GGGGCuCGGCccGGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 196456 0.69 0.350594
Target:  5'- -cGgCCUCGGGCgUGGGCCGCa-GCCCc -3'
miRNA:   3'- aaCaGGGGCUCG-GCCCGGCGgcCGGG- -5'
14058 5' -67.6 NC_003521.1 + 119885 0.69 0.350594
Target:  5'- cUG-CCCCucGCCGGaGCCGCC-GCCg -3'
miRNA:   3'- aACaGGGGcuCGGCC-CGGCGGcCGGg -5'
14058 5' -67.6 NC_003521.1 + 109743 0.69 0.348488
Target:  5'- -cGgagCCCgcgCGAGCCGcGGUCGCCgccaccgcguccgaGGCCCg -3'
miRNA:   3'- aaCa--GGG---GCUCGGC-CCGGCGG--------------CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 185570 0.69 0.343607
Target:  5'- uUUGUCCCCc-G-CGGGCuCGCCGGCgagCCg -3'
miRNA:   3'- -AACAGGGGcuCgGCCCG-GCGGCCG---GG- -5'
14058 5' -67.6 NC_003521.1 + 201380 0.69 0.336721
Target:  5'- -gGcCCUCGGcGCCGGGCUcgGCCGGCa- -3'
miRNA:   3'- aaCaGGGGCU-CGGCCCGG--CGGCCGgg -5'
14058 5' -67.6 NC_003521.1 + 153083 0.69 0.364869
Target:  5'- -gGggCCCGGGCCGGggcccaccacGCCGCCGGgCg -3'
miRNA:   3'- aaCagGGGCUCGGCC----------CGGCGGCCgGg -5'
14058 5' -67.6 NC_003521.1 + 53634 0.69 0.357682
Target:  5'- aUGUCCCCGAuGCaggCGGGCCGUC--UCCg -3'
miRNA:   3'- aACAGGGGCU-CG---GCCCGGCGGccGGG- -5'
14058 5' -67.6 NC_003521.1 + 131039 0.69 0.357682
Target:  5'- -cGUCuCCUGGGCgGcGGCgGCgGGCCUc -3'
miRNA:   3'- aaCAG-GGGCUCGgC-CCGgCGgCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.