miRNA display CGI


Results 101 - 120 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14058 5' -67.6 NC_003521.1 + 2367 0.67 0.458544
Target:  5'- -cG-CCCCGcccGCCGaGGCCGCCcugcGCCUc -3'
miRNA:   3'- aaCaGGGGCu--CGGC-CCGGCGGc---CGGG- -5'
14058 5' -67.6 NC_003521.1 + 25618 0.67 0.458544
Target:  5'- --cUUCaCCGGGCUGGcGCUGCUGGCgCg -3'
miRNA:   3'- aacAGG-GGCUCGGCC-CGGCGGCCGgG- -5'
14058 5' -67.6 NC_003521.1 + 69698 0.67 0.475379
Target:  5'- -gGUCCUgGuGUCGGuGgCGgCGGCCCu -3'
miRNA:   3'- aaCAGGGgCuCGGCC-CgGCgGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 209321 0.67 0.475379
Target:  5'- cUUG-CCCaCGGGCUGGGCCuguGCCaaCCCg -3'
miRNA:   3'- -AACaGGG-GCUCGGCCCGG---CGGccGGG- -5'
14058 5' -67.6 NC_003521.1 + 191698 0.67 0.466922
Target:  5'- -aGUCCCCGcAGCagCGGcGCCG-CGGUCa -3'
miRNA:   3'- aaCAGGGGC-UCG--GCC-CGGCgGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 59340 0.67 0.475379
Target:  5'- -gGUCCuucaCCGAGCUgggauGGGCCGUCuGCgCCg -3'
miRNA:   3'- aaCAGG----GGCUCGG-----CCCGGCGGcCG-GG- -5'
14058 5' -67.6 NC_003521.1 + 48597 0.67 0.475379
Target:  5'- --cUCCCgCGGcGCCGGGUCGCaagaaacagGGUCCg -3'
miRNA:   3'- aacAGGG-GCU-CGGCCCGGCGg--------CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 74478 0.67 0.471987
Target:  5'- -cGUCCUgggcuuCGAGCUGGuGCCGCCcuucuacuucaacGCCCu -3'
miRNA:   3'- aaCAGGG------GCUCGGCC-CGGCGGc------------CGGG- -5'
14058 5' -67.6 NC_003521.1 + 137152 0.67 0.442031
Target:  5'- --cUCgCCCGccauGGCCGcGGCCGCagCGGCCg -3'
miRNA:   3'- aacAG-GGGC----UCGGC-CCGGCG--GCCGGg -5'
14058 5' -67.6 NC_003521.1 + 148623 0.67 0.442031
Target:  5'- -cGUCgCgCG-GCCGGGCgGCgaaaaaCGGCCCc -3'
miRNA:   3'- aaCAGgG-GCuCGGCCCGgCG------GCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 55240 0.67 0.458544
Target:  5'- -aG-CCCCGAGCgGcucGCCGgCGaGCCCg -3'
miRNA:   3'- aaCaGGGGCUCGgCc--CGGCgGC-CGGG- -5'
14058 5' -67.6 NC_003521.1 + 202594 0.67 0.458544
Target:  5'- -cG-CCCCGcccGCCGaGGCCGCCcugcGCCUc -3'
miRNA:   3'- aaCaGGGGCu--CGGC-CCGGCGGc---CGGG- -5'
14058 5' -67.6 NC_003521.1 + 164002 0.67 0.466922
Target:  5'- -cGUCCUCu--UCGGGCCgaGCCGGUCCc -3'
miRNA:   3'- aaCAGGGGcucGGCCCGG--CGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 112387 0.67 0.475379
Target:  5'- -cGUCCaCCuGGCUGGcgcagugcGCCGaCCGGCCg -3'
miRNA:   3'- aaCAGG-GGcUCGGCC--------CGGC-GGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 111680 0.67 0.450246
Target:  5'- --aUCCCCuucGAGCUGaGcGCCGCCuGCCUg -3'
miRNA:   3'- aacAGGGG---CUCGGC-C-CGGCGGcCGGG- -5'
14058 5' -67.6 NC_003521.1 + 114398 0.66 0.518741
Target:  5'- --aUCCUCGAccGCCuGGCCGCCaucgcgcagGGCCg -3'
miRNA:   3'- aacAGGGGCU--CGGcCCGGCGG---------CCGGg -5'
14058 5' -67.6 NC_003521.1 + 127772 0.66 0.518741
Target:  5'- --cUCCUCGuAGUCGGGCgGC-GGCCg -3'
miRNA:   3'- aacAGGGGC-UCGGCCCGgCGgCCGGg -5'
14058 5' -67.6 NC_003521.1 + 88468 0.66 0.531167
Target:  5'- -cG-CCCCG-GCCGGccccagagcagcgucGgCGCgGGCCCg -3'
miRNA:   3'- aaCaGGGGCuCGGCC---------------CgGCGgCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 138057 0.66 0.52494
Target:  5'- -gGUCgCCCGcgaccgccgcggacAGCUGaGG-CGCUGGCCCu -3'
miRNA:   3'- aaCAG-GGGC--------------UCGGC-CCgGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 175768 0.66 0.518741
Target:  5'- -gGUCCCCGGGCuCGuuguuagaGGCauaccccacaGCCucGGCCCu -3'
miRNA:   3'- aaCAGGGGCUCG-GC--------CCGg---------CGG--CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.