miRNA display CGI


Results 121 - 140 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14058 5' -67.6 NC_003521.1 + 213444 0.66 0.492518
Target:  5'- --aUCCCCGuGGCCuGGCCccCCGGCUg -3'
miRNA:   3'- aacAGGGGC-UCGGcCCGGc-GGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 13308 0.66 0.492518
Target:  5'- --aUCCaacaUGAGCCuGGGCUGCCuGCCg -3'
miRNA:   3'- aacAGGg---GCUCGG-CCCGGCGGcCGGg -5'
14058 5' -67.6 NC_003521.1 + 43319 0.66 0.497715
Target:  5'- --uUCCCCGGaacgaacacugcuCCGcGCCGuCCGGCCCg -3'
miRNA:   3'- aacAGGGGCUc------------GGCcCGGC-GGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 214687 0.66 0.501193
Target:  5'- --uUCUCCGAaaGaaGGGCggaagcaGCCGGCCCg -3'
miRNA:   3'- aacAGGGGCU--CggCCCGg------CGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 60804 0.66 0.501193
Target:  5'- -gGUCCCgucuccuaCGAGCC--GCUGCUGGCCUu -3'
miRNA:   3'- aaCAGGG--------GCUCGGccCGGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 91384 0.66 0.501193
Target:  5'- ---aCCCCGGGcCCGGacccCCGacccaaaucCCGGCCCa -3'
miRNA:   3'- aacaGGGGCUC-GGCCc---GGC---------GGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 120992 0.66 0.501193
Target:  5'- -cGUCCUCgucgGAGUCGGaGCCGCUGcUCCa -3'
miRNA:   3'- aaCAGGGG----CUCGGCC-CGGCGGCcGGG- -5'
14058 5' -67.6 NC_003521.1 + 81712 0.66 0.501193
Target:  5'- -cGUCCCaggaGAGCaCGGaGUCGCCccgcuccaaaaaGGCCa -3'
miRNA:   3'- aaCAGGGg---CUCG-GCC-CGGCGG------------CCGGg -5'
14058 5' -67.6 NC_003521.1 + 153477 0.66 0.509058
Target:  5'- --cUCCUCGGGCuccggcuCGGGCCGuCUGGUCa -3'
miRNA:   3'- aacAGGGGCUCG-------GCCCGGC-GGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 149053 0.66 0.509935
Target:  5'- -cGUgCCCGcGCUGGGCUucgacgcgGCCGcGCUCu -3'
miRNA:   3'- aaCAgGGGCuCGGCCCGG--------CGGC-CGGG- -5'
14058 5' -67.6 NC_003521.1 + 117655 0.66 0.509935
Target:  5'- cUGcgCCgCGAGaCGGuG-CGCCGGCCCu -3'
miRNA:   3'- aACa-GGgGCUCgGCC-CgGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 155336 0.66 0.509935
Target:  5'- -gGUCCCggcggGGGCgCGGGCa-CCGGCaCCa -3'
miRNA:   3'- aaCAGGGg----CUCG-GCCCGgcGGCCG-GG- -5'
14058 5' -67.6 NC_003521.1 + 101370 0.66 0.517857
Target:  5'- -aGUCCCgggugcgCGAGCCGucgcGCCGCuugaCGGCCa -3'
miRNA:   3'- aaCAGGG-------GCUCGGCc---CGGCG----GCCGGg -5'
14058 5' -67.6 NC_003521.1 + 114398 0.66 0.518741
Target:  5'- --aUCCUCGAccGCCuGGCCGCCaucgcgcagGGCCg -3'
miRNA:   3'- aacAGGGGCU--CGGcCCGGCGG---------CCGGg -5'
14058 5' -67.6 NC_003521.1 + 128362 0.66 0.518741
Target:  5'- gUGgCCCC--GCCGGGCgCGCCcaccagGGCCg -3'
miRNA:   3'- aACaGGGGcuCGGCCCG-GCGG------CCGGg -5'
14058 5' -67.6 NC_003521.1 + 103563 0.66 0.518741
Target:  5'- -gGcCCCCGcucuGCCcgcugccGCCGUCGGCCCc -3'
miRNA:   3'- aaCaGGGGCu---CGGcc-----CGGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 144872 0.66 0.518741
Target:  5'- -gGUCCCCGAaccGCauccgugaGGGCUcugauCCGGCUCg -3'
miRNA:   3'- aaCAGGGGCU---CGg-------CCCGGc----GGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 127772 0.66 0.518741
Target:  5'- --cUCCUCGuAGUCGGGCgGC-GGCCg -3'
miRNA:   3'- aacAGGGGC-UCGGCCCGgCGgCCGGg -5'
14058 5' -67.6 NC_003521.1 + 126965 0.66 0.518741
Target:  5'- -cGgaaCCCGcGCCGucGUCGCCGGCCg -3'
miRNA:   3'- aaCag-GGGCuCGGCc-CGGCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 175768 0.66 0.518741
Target:  5'- -gGUCCCCGGGCuCGuuguuagaGGCauaccccacaGCCucGGCCCu -3'
miRNA:   3'- aaCAGGGGCUCG-GC--------CCGg---------CGG--CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.