Results 101 - 120 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14058 | 5' | -67.6 | NC_003521.1 | + | 196456 | 0.69 | 0.350594 |
Target: 5'- -cGgCCUCGGGCgUGGGCCGCa-GCCCc -3' miRNA: 3'- aaCaGGGGCUCG-GCCCGGCGgcCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 109743 | 0.69 | 0.348488 |
Target: 5'- -cGgagCCCgcgCGAGCCGcGGUCGCCgccaccgcguccgaGGCCCg -3' miRNA: 3'- aaCa--GGG---GCUCGGC-CCGGCGG--------------CCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 185570 | 0.69 | 0.343607 |
Target: 5'- uUUGUCCCCc-G-CGGGCuCGCCGGCgagCCg -3' miRNA: 3'- -AACAGGGGcuCgGCCCG-GCGGCCG---GG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 142558 | 0.69 | 0.343607 |
Target: 5'- cUUGUCgCCC--GCCaGGCuCGCCGuGCCCg -3' miRNA: 3'- -AACAG-GGGcuCGGcCCG-GCGGC-CGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 119983 | 0.69 | 0.343607 |
Target: 5'- -cGUCgaCGAGCCGGgcgacaugcGCCGCUGGCUg -3' miRNA: 3'- aaCAGggGCUCGGCC---------CGGCGGCCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 118916 | 0.69 | 0.336721 |
Target: 5'- ---cCCCaCGGGCCGGGCCaUCuGCCCc -3' miRNA: 3'- aacaGGG-GCUCGGCCCGGcGGcCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 201380 | 0.69 | 0.336721 |
Target: 5'- -gGcCCUCGGcGCCGGGCUcgGCCGGCa- -3' miRNA: 3'- aaCaGGGGCU-CGGCCCGG--CGGCCGgg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 187620 | 0.69 | 0.329262 |
Target: 5'- cUG-CCgggCGAGCCGGGCCGCgcgccgcUGGCCa -3' miRNA: 3'- aACaGGg--GCUCGGCCCGGCG-------GCCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 17351 | 0.69 | 0.329262 |
Target: 5'- ---cUCCCGGGCCGugacgccGGCgCGgCGGCCCa -3' miRNA: 3'- aacaGGGGCUCGGC-------CCG-GCgGCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 50870 | 0.69 | 0.323251 |
Target: 5'- -gGUCCCUGAGgaaCGGcUCGgCGGCCCg -3' miRNA: 3'- aaCAGGGGCUCg--GCCcGGCgGCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 43814 | 0.69 | 0.322588 |
Target: 5'- aUGUCgCagcAGCCGGgucagccGCCGCCGGCCg -3' miRNA: 3'- aACAGgGgc-UCGGCC-------CGGCGGCCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 17414 | 0.7 | 0.316669 |
Target: 5'- uUUGaCgCCGcGCCGGGgCGCCacacGGCCCg -3' miRNA: 3'- -AACaGgGGCuCGGCCCgGCGG----CCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 135181 | 0.7 | 0.310188 |
Target: 5'- ---cCCCCGAGCUGGGCuucaCGCacacGCCCg -3' miRNA: 3'- aacaGGGGCUCGGCCCG----GCGgc--CGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 94955 | 0.7 | 0.310188 |
Target: 5'- -cGUCgUCGGcGCCGcccGCCGCCGGgCCCa -3' miRNA: 3'- aaCAGgGGCU-CGGCc--CGGCGGCC-GGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 229070 | 0.7 | 0.310188 |
Target: 5'- -cGUCCCCagggcGAGUCGGGCCcGUcgaugaCGGCCg -3' miRNA: 3'- aaCAGGGG-----CUCGGCCCGG-CG------GCCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 185054 | 0.7 | 0.303808 |
Target: 5'- --aUCUUCGAGCUGuaCCGCCGGCCg -3' miRNA: 3'- aacAGGGGCUCGGCccGGCGGCCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 88552 | 0.7 | 0.303808 |
Target: 5'- --cUCCUCGGGgCaGGGCaccaGCUGGCCCg -3' miRNA: 3'- aacAGGGGCUCgG-CCCGg---CGGCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 32878 | 0.7 | 0.303808 |
Target: 5'- uUUGgcgCCCgCGccGCCGGugcuGCCGCCGuGCCCg -3' miRNA: 3'- -AACa--GGG-GCu-CGGCC----CGGCGGC-CGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 196279 | 0.7 | 0.303176 |
Target: 5'- -cGUCCUcaugugagcgCGuGCCGGGCCGCUugaugcuGGCCa -3' miRNA: 3'- aaCAGGG----------GCuCGGCCCGGCGG-------CCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 36675 | 0.7 | 0.29753 |
Target: 5'- -gGUCUcggCCGAGCUGaGGCCGggcuccggcgcCUGGCCCg -3' miRNA: 3'- aaCAGG---GGCUCGGC-CCGGC-----------GGCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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