miRNA display CGI


Results 81 - 100 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14058 5' -67.6 NC_003521.1 + 119983 0.69 0.343607
Target:  5'- -cGUCgaCGAGCCGGgcgacaugcGCCGCUGGCUg -3'
miRNA:   3'- aaCAGggGCUCGGCC---------CGGCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 120268 0.78 0.088919
Target:  5'- --aUCCCCGGGCgcuccccCGGGaCCGCCGGCCg -3'
miRNA:   3'- aacAGGGGCUCG-------GCCC-GGCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 120992 0.66 0.501193
Target:  5'- -cGUCCUCgucgGAGUCGGaGCCGCUGcUCCa -3'
miRNA:   3'- aaCAGGGG----CUCGGCC-CGGCGGCcGGG- -5'
14058 5' -67.6 NC_003521.1 + 123115 0.68 0.417908
Target:  5'- -cGUCCUC--GCCGGGCCGCUGuaCg -3'
miRNA:   3'- aaCAGGGGcuCGGCCCGGCGGCcgGg -5'
14058 5' -67.6 NC_003521.1 + 126849 0.68 0.402278
Target:  5'- -gGUgCCCG-GCC-GGCCGCCuGCCg -3'
miRNA:   3'- aaCAgGGGCuCGGcCCGGCGGcCGGg -5'
14058 5' -67.6 NC_003521.1 + 126965 0.66 0.518741
Target:  5'- -cGgaaCCCGcGCCGucGUCGCCGGCCg -3'
miRNA:   3'- aaCag-GGGCuCGGCc-CGGCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 127772 0.66 0.518741
Target:  5'- --cUCCUCGuAGUCGGGCgGC-GGCCg -3'
miRNA:   3'- aacAGGGGC-UCGGCCCGgCGgCCGGg -5'
14058 5' -67.6 NC_003521.1 + 128362 0.66 0.518741
Target:  5'- gUGgCCCC--GCCGGGCgCGCCcaccagGGCCg -3'
miRNA:   3'- aACaGGGGcuCGGCCCG-GCGG------CCGGg -5'
14058 5' -67.6 NC_003521.1 + 128521 0.7 0.291353
Target:  5'- -aGUCgCUGGGCaGGuGCgGCUGGCCCg -3'
miRNA:   3'- aaCAGgGGCUCGgCC-CGgCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 129812 0.67 0.42586
Target:  5'- -cGUCaagUUGGuGCUGGGCCGCCugcugcuggGGCCCg -3'
miRNA:   3'- aaCAGg--GGCU-CGGCCCGGCGG---------CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 131039 0.69 0.357682
Target:  5'- -cGUCuCCUGGGCgGcGGCgGCgGGCCUc -3'
miRNA:   3'- aaCAG-GGGCUCGgC-CCGgCGgCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 135181 0.7 0.310188
Target:  5'- ---cCCCCGAGCUGGGCuucaCGCacacGCCCg -3'
miRNA:   3'- aacaGGGGCUCGGCCCG----GCGgc--CGGG- -5'
14058 5' -67.6 NC_003521.1 + 137152 0.67 0.442031
Target:  5'- --cUCgCCCGccauGGCCGcGGCCGCagCGGCCg -3'
miRNA:   3'- aacAG-GGGC----UCGGC-CCGGCG--GCCGGg -5'
14058 5' -67.6 NC_003521.1 + 138024 0.78 0.084959
Target:  5'- cUGcCgCCCGAGCUGgcGGCCGCCGGCgCCg -3'
miRNA:   3'- aACaG-GGGCUCGGC--CCGGCGGCCG-GG- -5'
14058 5' -67.6 NC_003521.1 + 138057 0.66 0.52494
Target:  5'- -gGUCgCCCGcgaccgccgcggacAGCUGaGG-CGCUGGCCCu -3'
miRNA:   3'- aaCAG-GGGC--------------UCGGC-CCgGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 142275 0.66 0.527605
Target:  5'- -cGggCUCGGGCUGGGacCCGCCgccgcugcagcGGCCCa -3'
miRNA:   3'- aaCagGGGCUCGGCCC--GGCGG-----------CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 142558 0.69 0.343607
Target:  5'- cUUGUCgCCC--GCCaGGCuCGCCGuGCCCg -3'
miRNA:   3'- -AACAG-GGGcuCGGcCCG-GCGGC-CGGG- -5'
14058 5' -67.6 NC_003521.1 + 144872 0.66 0.518741
Target:  5'- -gGUCCCCGAaccGCauccgugaGGGCUcugauCCGGCUCg -3'
miRNA:   3'- aaCAGGGGCU---CGg-------CCCGGc----GGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 145857 0.67 0.442031
Target:  5'- -cGUCUCUGGGCCcGGCgGCgggCGGCgCCg -3'
miRNA:   3'- aaCAGGGGCUCGGcCCGgCG---GCCG-GG- -5'
14058 5' -67.6 NC_003521.1 + 148623 0.67 0.442031
Target:  5'- -cGUCgCgCG-GCCGGGCgGCgaaaaaCGGCCCc -3'
miRNA:   3'- aaCAGgG-GCuCGGCCCGgCG------GCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.