Results 101 - 120 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14058 | 5' | -67.6 | NC_003521.1 | + | 149053 | 0.66 | 0.509935 |
Target: 5'- -cGUgCCCGcGCUGGGCUucgacgcgGCCGcGCUCu -3' miRNA: 3'- aaCAgGGGCuCGGCCCGG--------CGGC-CGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 149531 | 0.66 | 0.527605 |
Target: 5'- --cUCUUCGAGUCGGGCgGCgCGcGCUCc -3' miRNA: 3'- aacAGGGGCUCGGCCCGgCG-GC-CGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 151098 | 0.71 | 0.273425 |
Target: 5'- ---cCCUCGGGUCGGGCCGCUGGg-- -3' miRNA: 3'- aacaGGGGCUCGGCCCGGCGGCCggg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 151619 | 0.72 | 0.228941 |
Target: 5'- gUGUCCCCGguuAGCaauucuucuCCGCCGGCCCg -3' miRNA: 3'- aACAGGGGC---UCGgccc-----GGCGGCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 151649 | 0.68 | 0.372156 |
Target: 5'- -cGUCCagcaGGGCCaGGCC-CaCGGCCCa -3' miRNA: 3'- aaCAGGgg--CUCGGcCCGGcG-GCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 152144 | 1.08 | 0.000543 |
Target: 5'- uUUGUCCCCGAGCCGGGCCGCCGGCCCa -3' miRNA: 3'- -AACAGGGGCUCGGCCCGGCGGCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 153083 | 0.69 | 0.364869 |
Target: 5'- -gGggCCCGGGCCGGggcccaccacGCCGCCGGgCg -3' miRNA: 3'- aaCagGGGCUCGGCC----------CGGCGGCCgGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 153477 | 0.66 | 0.509058 |
Target: 5'- --cUCCUCGGGCuccggcuCGGGCCGuCUGGUCa -3' miRNA: 3'- aacAGGGGCUCG-------GCCCGGC-GGCCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 154426 | 0.68 | 0.379542 |
Target: 5'- -cGUcCCCCGcGUCGa-CCGCUGGCCCu -3' miRNA: 3'- aaCA-GGGGCuCGGCccGGCGGCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 154925 | 0.66 | 0.518741 |
Target: 5'- cUGaCCaaGAGUCGGGUCauGUCGGCCUu -3' miRNA: 3'- aACaGGggCUCGGCCCGG--CGGCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 155336 | 0.66 | 0.509935 |
Target: 5'- -gGUCCCggcggGGGCgCGGGCa-CCGGCaCCa -3' miRNA: 3'- aaCAGGGg----CUCG-GCCCGgcGGCCG-GG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 158051 | 0.68 | 0.402278 |
Target: 5'- -cGUCCCUGuGCUccacGGcCCGCCGGUCg -3' miRNA: 3'- aaCAGGGGCuCGGc---CC-GGCGGCCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 164002 | 0.67 | 0.466922 |
Target: 5'- -cGUCCUCu--UCGGGCCgaGCCGGUCCc -3' miRNA: 3'- aaCAGGGGcucGGCCCGG--CGGCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 167668 | 0.66 | 0.483912 |
Target: 5'- -gGUCgcaggCCGAGgCGGcGCCGCCGccgcuGCCCc -3' miRNA: 3'- aaCAGg----GGCUCgGCC-CGGCGGC-----CGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 167832 | 0.68 | 0.379542 |
Target: 5'- ---cCCCCGGGCaCGaccGCCGCgGGCUCg -3' miRNA: 3'- aacaGGGGCUCG-GCc--CGGCGgCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 175768 | 0.66 | 0.518741 |
Target: 5'- -gGUCCCCGGGCuCGuuguuagaGGCauaccccacaGCCucGGCCCu -3' miRNA: 3'- aaCAGGGGCUCG-GC--------CCGg---------CGG--CCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 179454 | 0.68 | 0.379542 |
Target: 5'- -gGUCCuuGAGCuguugcaggaagCGGGCCGUgGGCa- -3' miRNA: 3'- aaCAGGggCUCG------------GCCCGGCGgCCGgg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 181199 | 0.66 | 0.492518 |
Target: 5'- -cGcCUgCGAGCCGcGGUCGCCgccggGGCCg -3' miRNA: 3'- aaCaGGgGCUCGGC-CCGGCGG-----CCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 185054 | 0.7 | 0.303808 |
Target: 5'- --aUCUUCGAGCUGuaCCGCCGGCCg -3' miRNA: 3'- aacAGGGGCUCGGCccGGCGGCCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 185570 | 0.69 | 0.343607 |
Target: 5'- uUUGUCCCCc-G-CGGGCuCGCCGGCgagCCg -3' miRNA: 3'- -AACAGGGGcuCgGCCCG-GCGGCCG---GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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