miRNA display CGI


Results 81 - 100 of 154 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14058 5' -67.6 NC_003521.1 + 114503 0.67 0.42586
Target:  5'- cUGUCC----GUCGuGGCCGCCGuGCCCa -3'
miRNA:   3'- aACAGGggcuCGGC-CCGGCGGC-CGGG- -5'
14058 5' -67.6 NC_003521.1 + 114398 0.66 0.518741
Target:  5'- --aUCCUCGAccGCCuGGCCGCCaucgcgcagGGCCg -3'
miRNA:   3'- aacAGGGGCU--CGGcCCGGCGG---------CCGGg -5'
14058 5' -67.6 NC_003521.1 + 113726 0.71 0.267649
Target:  5'- --uUCCacuacgaacaCGGGCUGGGCCGCCucucgucgguGGCCCu -3'
miRNA:   3'- aacAGGg---------GCUCGGCCCGGCGG----------CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 112690 0.73 0.201294
Target:  5'- --uUCgCCGAGCgCGGGCCGCCcucGGaCCCc -3'
miRNA:   3'- aacAGgGGCUCG-GCCCGGCGG---CC-GGG- -5'
14058 5' -67.6 NC_003521.1 + 112387 0.67 0.475379
Target:  5'- -cGUCCaCCuGGCUGGcgcagugcGCCGaCCGGCCg -3'
miRNA:   3'- aaCAGG-GGcUCGGCC--------CGGC-GGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 111680 0.67 0.450246
Target:  5'- --aUCCCCuucGAGCUGaGcGCCGCCuGCCUg -3'
miRNA:   3'- aacAGGGG---CUCGGC-C-CGGCGGcCGGG- -5'
14058 5' -67.6 NC_003521.1 + 109743 0.69 0.348488
Target:  5'- -cGgagCCCgcgCGAGCCGcGGUCGCCgccaccgcguccgaGGCCCg -3'
miRNA:   3'- aaCa--GGG---GCUCGGC-CCGGCGG--------------CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 107067 0.86 0.022629
Target:  5'- -cGUCCCCGGaaucGCCGGGCCuGCCGGCCa -3'
miRNA:   3'- aaCAGGGGCU----CGGCCCGG-CGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 106105 0.66 0.483912
Target:  5'- -aGgCCUCGGGCaCGGGCgUGgCGGCCg -3'
miRNA:   3'- aaCaGGGGCUCG-GCCCG-GCgGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 104814 0.7 0.291353
Target:  5'- cUGaUCCCCGAGaacaCGGGCgUGaCgCGGCCCc -3'
miRNA:   3'- aAC-AGGGGCUCg---GCCCG-GC-G-GCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 103563 0.66 0.518741
Target:  5'- -gGcCCCCGcucuGCCcgcugccGCCGUCGGCCCc -3'
miRNA:   3'- aaCaGGGGCu---CGGcc-----CGGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 103225 0.67 0.466922
Target:  5'- -gGUCgCCG-GCCaGGCgG-CGGCCCa -3'
miRNA:   3'- aaCAGgGGCuCGGcCCGgCgGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 101913 0.67 0.433902
Target:  5'- -gGUCCgacaCCGAGCCGGcGUacuCGCCGGUg- -3'
miRNA:   3'- aaCAGG----GGCUCGGCC-CG---GCGGCCGgg -5'
14058 5' -67.6 NC_003521.1 + 101557 0.68 0.410047
Target:  5'- cUGUCCCUGAGuCCGaaaGCUGUCGaGUCCc -3'
miRNA:   3'- aACAGGGGCUC-GGCc--CGGCGGC-CGGG- -5'
14058 5' -67.6 NC_003521.1 + 101370 0.66 0.517857
Target:  5'- -aGUCCCgggugcgCGAGCCGucgcGCCGCuugaCGGCCa -3'
miRNA:   3'- aaCAGGG-------GCUCGGCc---CGGCG----GCCGGg -5'
14058 5' -67.6 NC_003521.1 + 100751 0.71 0.273425
Target:  5'- ---aCCCCGAGCUGGGCCuggcgcacucguGCaacgaGGCCUu -3'
miRNA:   3'- aacaGGGGCUCGGCCCGG------------CGg----CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 95762 0.67 0.423465
Target:  5'- -aGUCgUCCGAGCCGcccagacggucaucGuGCCGCuCGGCCa -3'
miRNA:   3'- aaCAG-GGGCUCGGC--------------C-CGGCG-GCCGGg -5'
14058 5' -67.6 NC_003521.1 + 94955 0.7 0.310188
Target:  5'- -cGUCgUCGGcGCCGcccGCCGCCGGgCCCa -3'
miRNA:   3'- aaCAGgGGCU-CGGCc--CGGCGGCC-GGG- -5'
14058 5' -67.6 NC_003521.1 + 92179 0.66 0.483912
Target:  5'- --aUCCCCGccgAGCUcgGGGCCGuuuuucgccgcCCGGCCg -3'
miRNA:   3'- aacAGGGGC---UCGG--CCCGGC-----------GGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 91384 0.66 0.501193
Target:  5'- ---aCCCCGGGcCCGGacccCCGacccaaaucCCGGCCCa -3'
miRNA:   3'- aacaGGGGCUC-GGCCc---GGC---------GGCCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.