Results 141 - 154 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14058 | 5' | -67.6 | NC_003521.1 | + | 17351 | 0.69 | 0.329262 |
Target: 5'- ---cUCCCGGGCCGugacgccGGCgCGgCGGCCCa -3' miRNA: 3'- aacaGGGGCUCGGC-------CCG-GCgGCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 16807 | 0.72 | 0.215213 |
Target: 5'- -cG-CCCCGAccGCCGGGcCCGCCGcuGCCg -3' miRNA: 3'- aaCaGGGGCU--CGGCCC-GGCGGC--CGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 15235 | 0.67 | 0.466922 |
Target: 5'- -----gCCGAGCgCGaGGCCGCCGaGCgCCa -3' miRNA: 3'- aacaggGGCUCG-GC-CCGGCGGC-CG-GG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 13308 | 0.66 | 0.492518 |
Target: 5'- --aUCCaacaUGAGCCuGGGCUGCCuGCCg -3' miRNA: 3'- aacAGGg---GCUCGG-CCCGGCGGcCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 13195 | 0.67 | 0.450246 |
Target: 5'- gUGcCgCUCGGGCCgccguguuggaGGGCCGaCCGGCgCCc -3' miRNA: 3'- aACaG-GGGCUCGG-----------CCCGGC-GGCCG-GG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 11925 | 0.76 | 0.115778 |
Target: 5'- -aGUCCCCcAGCCGGGCCcgGCUGGUgCu -3' miRNA: 3'- aaCAGGGGcUCGGCCCGG--CGGCCGgG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 4550 | 0.78 | 0.091291 |
Target: 5'- -gGUCCCCGgggagucacuacGGCCGGGgcacaCGCCGGCCUc -3' miRNA: 3'- aaCAGGGGC------------UCGGCCCg----GCGGCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 2456 | 0.66 | 0.526716 |
Target: 5'- --aUCCCCGcGCCccgcuauGGGUacgcgacggCGCCGGCCa -3' miRNA: 3'- aacAGGGGCuCGG-------CCCG---------GCGGCCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 2367 | 0.67 | 0.458544 |
Target: 5'- -cG-CCCCGcccGCCGaGGCCGCCcugcGCCUc -3' miRNA: 3'- aaCaGGGGCu--CGGC-CCGGCGGc---CGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 2059 | 0.73 | 0.205845 |
Target: 5'- gUGUCCCCaccucugucGAGCU---CCGCCGGCCCg -3' miRNA: 3'- aACAGGGG---------CUCGGcccGGCGGCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 1439 | 0.67 | 0.433902 |
Target: 5'- cUGggCCgCGAGCUGcGCCGCCGGUg- -3' miRNA: 3'- aACa-GGgGCUCGGCcCGGCGGCCGgg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 1383 | 0.68 | 0.379542 |
Target: 5'- cUGUCCCCGAGCCcGcGCUGCUGcggacGCUg -3' miRNA: 3'- aACAGGGGCUCGGcC-CGGCGGC-----CGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 1155 | 0.74 | 0.175395 |
Target: 5'- -cGUCCCCGGGagccaCGGcGCCGCCuacgggacuggacGGCCUg -3' miRNA: 3'- aaCAGGGGCUCg----GCC-CGGCGG-------------CCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 163 | 0.72 | 0.235047 |
Target: 5'- -aGUCCCCGcGaCGacCCGCCGGCCCg -3' miRNA: 3'- aaCAGGGGCuCgGCccGGCGGCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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