Results 61 - 80 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14058 | 5' | -67.6 | NC_003521.1 | + | 131039 | 0.69 | 0.357682 |
Target: 5'- -cGUCuCCUGGGCgGcGGCgGCgGGCCUc -3' miRNA: 3'- aaCAG-GGGCUCGgC-CCGgCGgCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 229070 | 0.7 | 0.310188 |
Target: 5'- -cGUCCCCagggcGAGUCGGGCCcGUcgaugaCGGCCg -3' miRNA: 3'- aaCAGGGG-----CUCGGCCCGG-CG------GCCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 43814 | 0.69 | 0.322588 |
Target: 5'- aUGUCgCagcAGCCGGgucagccGCCGCCGGCCg -3' miRNA: 3'- aACAGgGgc-UCGGCC-------CGGCGGCCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 119983 | 0.69 | 0.343607 |
Target: 5'- -cGUCgaCGAGCCGGgcgacaugcGCCGCUGGCUg -3' miRNA: 3'- aaCAGggGCUCGGCC---------CGGCGGCCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 142558 | 0.69 | 0.343607 |
Target: 5'- cUUGUCgCCC--GCCaGGCuCGCCGuGCCCg -3' miRNA: 3'- -AACAG-GGGcuCGGcCCG-GCGGC-CGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 87863 | 0.69 | 0.357682 |
Target: 5'- gUGUCCUCGcaggcgcuGGCCaGGCCGuuGGCg- -3' miRNA: 3'- aACAGGGGC--------UCGGcCCGGCggCCGgg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 196435 | 0.69 | 0.357682 |
Target: 5'- cUGUCgCCCGGGUCGgccGGCUGCCGcGCg- -3' miRNA: 3'- aACAG-GGGCUCGGC---CCGGCGGC-CGgg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 151619 | 0.72 | 0.228941 |
Target: 5'- gUGUCCCCGguuAGCaauucuucuCCGCCGGCCCg -3' miRNA: 3'- aACAGGGGC---UCGgccc-----GGCGGCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 16807 | 0.72 | 0.215213 |
Target: 5'- -cG-CCCCGAccGCCGGGcCCGCCGcuGCCg -3' miRNA: 3'- aaCaGGGGCU--CGGCCC-GGCGGC--CGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 77964 | 0.72 | 0.215213 |
Target: 5'- -gGUCUUgGAGCC-GGCCGCgGGCUCg -3' miRNA: 3'- aaCAGGGgCUCGGcCCGGCGgCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 2059 | 0.73 | 0.205845 |
Target: 5'- gUGUCCCCaccucugucGAGCU---CCGCCGGCCCg -3' miRNA: 3'- aACAGGGG---------CUCGGcccGGCGGCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 112690 | 0.73 | 0.201294 |
Target: 5'- --uUCgCCGAGCgCGGGCCGCCcucGGaCCCc -3' miRNA: 3'- aacAGgGGCUCG-GCCCGGCGG---CC-GGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 89160 | 0.73 | 0.201294 |
Target: 5'- ---aCCCUGgacGGCUGGGCCGUgGGCCUg -3' miRNA: 3'- aacaGGGGC---UCGGCCCGGCGgCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 1155 | 0.74 | 0.175395 |
Target: 5'- -cGUCCCCGGGagccaCGGcGCCGCCuacgggacuggacGGCCUg -3' miRNA: 3'- aaCAGGGGCUCg----GCC-CGGCGG-------------CCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 236674 | 0.75 | 0.15321 |
Target: 5'- -gGUCCUgGGGaaGGggagaGCCGCCGGCCCg -3' miRNA: 3'- aaCAGGGgCUCggCC-----CGGCGGCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 11925 | 0.76 | 0.115778 |
Target: 5'- -aGUCCCCcAGCCGGGCCcgGCUGGUgCu -3' miRNA: 3'- aaCAGGGGcUCGGCCCGG--CGGCCGgG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 138024 | 0.78 | 0.084959 |
Target: 5'- cUGcCgCCCGAGCUGgcGGCCGCCGGCgCCg -3' miRNA: 3'- aACaG-GGGCUCGGC--CCGGCGGCCG-GG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 186328 | 0.79 | 0.075325 |
Target: 5'- -gGUCCac--GCCGGGCCGCCGGCCa -3' miRNA: 3'- aaCAGGggcuCGGCCCGGCGGCCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 107067 | 0.86 | 0.022629 |
Target: 5'- -cGUCCCCGGaaucGCCGGGCCuGCCGGCCa -3' miRNA: 3'- aaCAGGGGCU----CGGCCCGG-CGGCCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 88468 | 0.66 | 0.531167 |
Target: 5'- -cG-CCCCG-GCCGGccccagagcagcgucGgCGCgGGCCCg -3' miRNA: 3'- aaCaGGGGCuCGGCC---------------CgGCGgCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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