miRNA display CGI


Results 61 - 80 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14058 5' -67.6 NC_003521.1 + 90074 0.68 0.379542
Target:  5'- --cUCgCgGAGCagucCGGGCaGCCGGCCCa -3'
miRNA:   3'- aacAGgGgCUCG----GCCCGgCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 38601 0.68 0.39232
Target:  5'- gUGUCCCUGGguguucGCCGuaugcguuauuagaGGCgCGCCGGCUg -3'
miRNA:   3'- aACAGGGGCU------CGGC--------------CCG-GCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 196279 0.7 0.303176
Target:  5'- -cGUCCUcaugugagcgCGuGCCGGGCCGCUugaugcuGGCCa -3'
miRNA:   3'- aaCAGGG----------GCuCGGCCCGGCGG-------CCGGg -5'
14058 5' -67.6 NC_003521.1 + 135181 0.7 0.310188
Target:  5'- ---cCCCCGAGCUGGGCuucaCGCacacGCCCg -3'
miRNA:   3'- aacaGGGGCUCGGCCCG----GCGgc--CGGG- -5'
14058 5' -67.6 NC_003521.1 + 187620 0.69 0.329262
Target:  5'- cUG-CCgggCGAGCCGGGCCGCgcgccgcUGGCCa -3'
miRNA:   3'- aACaGGg--GCUCGGCCCGGCG-------GCCGGg -5'
14058 5' -67.6 NC_003521.1 + 118916 0.69 0.336721
Target:  5'- ---cCCCaCGGGCCGGGCCaUCuGCCCc -3'
miRNA:   3'- aacaGGG-GCUCGGCCCGGcGGcCGGG- -5'
14058 5' -67.6 NC_003521.1 + 109743 0.69 0.348488
Target:  5'- -cGgagCCCgcgCGAGCCGcGGUCGCCgccaccgcguccgaGGCCCg -3'
miRNA:   3'- aaCa--GGG---GCUCGGC-CCGGCGG--------------CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 119885 0.69 0.350594
Target:  5'- cUG-CCCCucGCCGGaGCCGCC-GCCg -3'
miRNA:   3'- aACaGGGGcuCGGCC-CGGCGGcCGGg -5'
14058 5' -67.6 NC_003521.1 + 74098 0.69 0.353417
Target:  5'- --uUCCCCGccaaggaugauagcuGGCUGuGGCCGCUGGUCa -3'
miRNA:   3'- aacAGGGGC---------------UCGGC-CCGGCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 77598 0.69 0.364869
Target:  5'- -cGUCCgCGAGUCccaGGCCGCCGGagCUa -3'
miRNA:   3'- aaCAGGgGCUCGGc--CCGGCGGCCg-GG- -5'
14058 5' -67.6 NC_003521.1 + 154925 0.66 0.518741
Target:  5'- cUGaCCaaGAGUCGGGUCauGUCGGCCUu -3'
miRNA:   3'- aACaGGggCUCGGCCCGG--CGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 144872 0.66 0.518741
Target:  5'- -gGUCCCCGAaccGCauccgugaGGGCUcugauCCGGCUCg -3'
miRNA:   3'- aaCAGGGGCU---CGg-------CCCGGc----GGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 209817 0.68 0.410047
Target:  5'- -cGUCCUC--GCCGGcGCCGUCGucGCCCc -3'
miRNA:   3'- aaCAGGGGcuCGGCC-CGGCGGC--CGGG- -5'
14058 5' -67.6 NC_003521.1 + 95762 0.67 0.423465
Target:  5'- -aGUCgUCCGAGCCGcccagacggucaucGuGCCGCuCGGCCa -3'
miRNA:   3'- aaCAG-GGGCUCGGC--------------C-CGGCG-GCCGGg -5'
14058 5' -67.6 NC_003521.1 + 188470 0.67 0.450246
Target:  5'- -cGcCUCCGAGCUacgagcaGGCCGUgGGCCUg -3'
miRNA:   3'- aaCaGGGGCUCGGc------CCGGCGgCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 2367 0.67 0.458544
Target:  5'- -cG-CCCCGcccGCCGaGGCCGCCcugcGCCUc -3'
miRNA:   3'- aaCaGGGGCu--CGGC-CCGGCGGc---CGGG- -5'
14058 5' -67.6 NC_003521.1 + 48597 0.67 0.475379
Target:  5'- --cUCCCgCGGcGCCGGGUCGCaagaaacagGGUCCg -3'
miRNA:   3'- aacAGGG-GCU-CGGCCCGGCGg--------CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 209321 0.67 0.475379
Target:  5'- cUUG-CCCaCGGGCUGGGCCuguGCCaaCCCg -3'
miRNA:   3'- -AACaGGG-GCUCGGCCCGG---CGGccGGG- -5'
14058 5' -67.6 NC_003521.1 + 181199 0.66 0.492518
Target:  5'- -cGcCUgCGAGCCGcGGUCGCCgccggGGCCg -3'
miRNA:   3'- aaCaGGgGCUCGGC-CCGGCGG-----CCGGg -5'
14058 5' -67.6 NC_003521.1 + 214687 0.66 0.501193
Target:  5'- --uUCUCCGAaaGaaGGGCggaagcaGCCGGCCCg -3'
miRNA:   3'- aacAGGGGCU--CggCCCGg------CGGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.