miRNA display CGI


Results 81 - 100 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14058 5' -67.6 NC_003521.1 + 95762 0.67 0.423465
Target:  5'- -aGUCgUCCGAGCCGcccagacggucaucGuGCCGCuCGGCCa -3'
miRNA:   3'- aaCAG-GGGCUCGGC--------------C-CGGCG-GCCGGg -5'
14058 5' -67.6 NC_003521.1 + 92179 0.66 0.483912
Target:  5'- --aUCCCCGccgAGCUcgGGGCCGuuuuucgccgcCCGGCCg -3'
miRNA:   3'- aacAGGGGC---UCGG--CCCGGC-----------GGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 167668 0.66 0.483912
Target:  5'- -gGUCgcaggCCGAGgCGGcGCCGCCGccgcuGCCCc -3'
miRNA:   3'- aaCAGg----GGCUCgGCC-CGGCGGC-----CGGG- -5'
14058 5' -67.6 NC_003521.1 + 69698 0.67 0.475379
Target:  5'- -gGUCCUgGuGUCGGuGgCGgCGGCCCu -3'
miRNA:   3'- aaCAGGGgCuCGGCC-CgGCgGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 35604 0.68 0.387024
Target:  5'- -gGUCCCCuGAuCCGc-CUGCCGGCCCu -3'
miRNA:   3'- aaCAGGGG-CUcGGCccGGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 48366 0.68 0.402278
Target:  5'- -cGUCCUgGAaaCCGGcGCCGCCGccauGCCCc -3'
miRNA:   3'- aaCAGGGgCUc-GGCC-CGGCGGC----CGGG- -5'
14058 5' -67.6 NC_003521.1 + 223315 0.68 0.417908
Target:  5'- -cG-CCgCCGGGCCGGGaaCCGCCGuGaCCg -3'
miRNA:   3'- aaCaGG-GGCUCGGCCC--GGCGGC-CgGG- -5'
14058 5' -67.6 NC_003521.1 + 120992 0.66 0.501193
Target:  5'- -cGUCCUCgucgGAGUCGGaGCCGCUGcUCCa -3'
miRNA:   3'- aaCAGGGG----CUCGGCC-CGGCGGCcGGG- -5'
14058 5' -67.6 NC_003521.1 + 149053 0.66 0.509935
Target:  5'- -cGUgCCCGcGCUGGGCUucgacgcgGCCGcGCUCu -3'
miRNA:   3'- aaCAgGGGCuCGGCCCGG--------CGGC-CGGG- -5'
14058 5' -67.6 NC_003521.1 + 101370 0.66 0.517857
Target:  5'- -aGUCCCgggugcgCGAGCCGucgcGCCGCuugaCGGCCa -3'
miRNA:   3'- aaCAGGG-------GCUCGGCc---CGGCG----GCCGGg -5'
14058 5' -67.6 NC_003521.1 + 114398 0.66 0.518741
Target:  5'- --aUCCUCGAccGCCuGGCCGCCaucgcgcagGGCCg -3'
miRNA:   3'- aacAGGGGCU--CGGcCCGGCGG---------CCGGg -5'
14058 5' -67.6 NC_003521.1 + 151649 0.68 0.372156
Target:  5'- -cGUCCagcaGGGCCaGGCC-CaCGGCCCa -3'
miRNA:   3'- aaCAGGgg--CUCGGcCCGGcG-GCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 154426 0.68 0.379542
Target:  5'- -cGUcCCCCGcGUCGa-CCGCUGGCCCu -3'
miRNA:   3'- aaCA-GGGGCuCGGCccGGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 201610 0.68 0.379542
Target:  5'- cUGUCCCCGAGCCcGcGCUGCUGcggacGCUg -3'
miRNA:   3'- aACAGGGGCUCGGcC-CGGCGGC-----CGGg -5'
14058 5' -67.6 NC_003521.1 + 138057 0.66 0.52494
Target:  5'- -gGUCgCCCGcgaccgccgcggacAGCUGaGG-CGCUGGCCCu -3'
miRNA:   3'- aaCAG-GGGC--------------UCGGC-CCgGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 126965 0.66 0.518741
Target:  5'- -cGgaaCCCGcGCCGucGUCGCCGGCCg -3'
miRNA:   3'- aaCag-GGGCuCGGCc-CGGCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 175768 0.66 0.518741
Target:  5'- -gGUCCCCGGGCuCGuuguuagaGGCauaccccacaGCCucGGCCCu -3'
miRNA:   3'- aaCAGGGGCUCG-GC--------CCGg---------CGG--CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 104814 0.7 0.291353
Target:  5'- cUGaUCCCCGAGaacaCGGGCgUGaCgCGGCCCc -3'
miRNA:   3'- aAC-AGGGGCUCg---GCCCG-GC-G-GCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 128521 0.7 0.291353
Target:  5'- -aGUCgCUGGGCaGGuGCgGCUGGCCCg -3'
miRNA:   3'- aaCAGgGGCUCGgCC-CGgCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 127772 0.66 0.518741
Target:  5'- --cUCCUCGuAGUCGGGCgGC-GGCCg -3'
miRNA:   3'- aacAGGGGC-UCGGCCCGgCGgCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.