miRNA display CGI


Results 101 - 120 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14058 5' -67.6 NC_003521.1 + 13308 0.66 0.492518
Target:  5'- --aUCCaacaUGAGCCuGGGCUGCCuGCCg -3'
miRNA:   3'- aacAGGg---GCUCGG-CCCGGCGGcCGGg -5'
14058 5' -67.6 NC_003521.1 + 60804 0.66 0.501193
Target:  5'- -gGUCCCgucuccuaCGAGCC--GCUGCUGGCCUu -3'
miRNA:   3'- aaCAGGG--------GCUCGGccCGGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 91384 0.66 0.501193
Target:  5'- ---aCCCCGGGcCCGGacccCCGacccaaaucCCGGCCCa -3'
miRNA:   3'- aacaGGGGCUC-GGCCc---GGC---------GGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 120992 0.66 0.501193
Target:  5'- -cGUCCUCgucgGAGUCGGaGCCGCUGcUCCa -3'
miRNA:   3'- aaCAGGGG----CUCGGCC-CGGCGGCcGGG- -5'
14058 5' -67.6 NC_003521.1 + 138057 0.66 0.52494
Target:  5'- -gGUCgCCCGcgaccgccgcggacAGCUGaGG-CGCUGGCCCu -3'
miRNA:   3'- aaCAG-GGGC--------------UCGGC-CCgGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 126965 0.66 0.518741
Target:  5'- -cGgaaCCCGcGCCGucGUCGCCGGCCg -3'
miRNA:   3'- aaCag-GGGCuCGGCc-CGGCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 149053 0.66 0.509935
Target:  5'- -cGUgCCCGcGCUGGGCUucgacgcgGCCGcGCUCu -3'
miRNA:   3'- aaCAgGGGCuCGGCCCGG--------CGGC-CGGG- -5'
14058 5' -67.6 NC_003521.1 + 127772 0.66 0.518741
Target:  5'- --cUCCUCGuAGUCGGGCgGC-GGCCg -3'
miRNA:   3'- aacAGGGGC-UCGGCCCGgCGgCCGGg -5'
14058 5' -67.6 NC_003521.1 + 164002 0.67 0.466922
Target:  5'- -cGUCCUCu--UCGGGCCgaGCCGGUCCc -3'
miRNA:   3'- aaCAGGGGcucGGCCCGG--CGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 202594 0.67 0.458544
Target:  5'- -cG-CCCCGcccGCCGaGGCCGCCcugcGCCUc -3'
miRNA:   3'- aaCaGGGGCu--CGGC-CCGGCGGc---CGGG- -5'
14058 5' -67.6 NC_003521.1 + 131039 0.69 0.357682
Target:  5'- -cGUCuCCUGGGCgGcGGCgGCgGGCCUc -3'
miRNA:   3'- aaCAG-GGGCUCGgC-CCGgCGgCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 53634 0.69 0.357682
Target:  5'- aUGUCCCCGAuGCaggCGGGCCGUC--UCCg -3'
miRNA:   3'- aACAGGGGCU-CG---GCCCGGCGGccGGG- -5'
14058 5' -67.6 NC_003521.1 + 153083 0.69 0.364869
Target:  5'- -gGggCCCGGGCCGGggcccaccacGCCGCCGGgCg -3'
miRNA:   3'- aaCagGGGCUCGGCC----------CGGCGGCCgGg -5'
14058 5' -67.6 NC_003521.1 + 151649 0.68 0.372156
Target:  5'- -cGUCCagcaGGGCCaGGCC-CaCGGCCCa -3'
miRNA:   3'- aaCAGGgg--CUCGGcCCGGcG-GCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 213014 0.68 0.372156
Target:  5'- cUGUaCCauGGcGCCGGGCgaGCCGGCCg -3'
miRNA:   3'- aACA-GGggCU-CGGCCCGg-CGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 154426 0.68 0.379542
Target:  5'- -cGUcCCCCGcGUCGa-CCGCUGGCCCu -3'
miRNA:   3'- aaCA-GGGGCuCGGCccGGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 201610 0.68 0.379542
Target:  5'- cUGUCCCCGAGCCcGcGCUGCUGcggacGCUg -3'
miRNA:   3'- aACAGGGGCUCGGcC-CGGCGGC-----CGGg -5'
14058 5' -67.6 NC_003521.1 + 222219 0.67 0.458544
Target:  5'- cUUGUCCugaCCGcGGCUGGGCCGCaGGaaCCa -3'
miRNA:   3'- -AACAGG---GGC-UCGGCCCGGCGgCCg-GG- -5'
14058 5' -67.6 NC_003521.1 + 101370 0.66 0.517857
Target:  5'- -aGUCCCgggugcgCGAGCCGucgcGCCGCuugaCGGCCa -3'
miRNA:   3'- aaCAGGG-------GCUCGGCc---CGGCG----GCCGGg -5'
14058 5' -67.6 NC_003521.1 + 55240 0.67 0.458544
Target:  5'- -aG-CCCCGAGCgGcucGCCGgCGaGCCCg -3'
miRNA:   3'- aaCaGGGGCUCGgCc--CGGCgGC-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.