miRNA display CGI


Results 121 - 140 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14058 5' -67.6 NC_003521.1 + 149053 0.66 0.509935
Target:  5'- -cGUgCCCGcGCUGGGCUucgacgcgGCCGcGCUCu -3'
miRNA:   3'- aaCAgGGGCuCGGCCCGG--------CGGC-CGGG- -5'
14058 5' -67.6 NC_003521.1 + 101370 0.66 0.517857
Target:  5'- -aGUCCCgggugcgCGAGCCGucgcGCCGCuugaCGGCCa -3'
miRNA:   3'- aaCAGGG-------GCUCGGCc---CGGCG----GCCGGg -5'
14058 5' -67.6 NC_003521.1 + 114398 0.66 0.518741
Target:  5'- --aUCCUCGAccGCCuGGCCGCCaucgcgcagGGCCg -3'
miRNA:   3'- aacAGGGGCU--CGGcCCGGCGG---------CCGGg -5'
14058 5' -67.6 NC_003521.1 + 127772 0.66 0.518741
Target:  5'- --cUCCUCGuAGUCGGGCgGC-GGCCg -3'
miRNA:   3'- aacAGGGGC-UCGGCCCGgCGgCCGGg -5'
14058 5' -67.6 NC_003521.1 + 126965 0.66 0.518741
Target:  5'- -cGgaaCCCGcGCCGucGUCGCCGGCCg -3'
miRNA:   3'- aaCag-GGGCuCGGCc-CGGCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 202594 0.67 0.458544
Target:  5'- -cG-CCCCGcccGCCGaGGCCGCCcugcGCCUc -3'
miRNA:   3'- aaCaGGGGCu--CGGC-CCGGCGGc---CGGG- -5'
14058 5' -67.6 NC_003521.1 + 55240 0.67 0.458544
Target:  5'- -aG-CCCCGAGCgGcucGCCGgCGaGCCCg -3'
miRNA:   3'- aaCaGGGGCUCGgCc--CGGCgGC-CGGG- -5'
14058 5' -67.6 NC_003521.1 + 201610 0.68 0.379542
Target:  5'- cUGUCCCCGAGCCcGcGCUGCUGcggacGCUg -3'
miRNA:   3'- aACAGGGGCUCGGcC-CGGCGGC-----CGGg -5'
14058 5' -67.6 NC_003521.1 + 238828 0.68 0.39232
Target:  5'- gUGUCCCUGGguguucGCCGuaugcguuauuagaGGCgCGCCGGCUg -3'
miRNA:   3'- aACAGGGGCU------CGGC--------------CCG-GCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 43535 0.68 0.397662
Target:  5'- --cUCCCguCGAGCCGcccucccgcuccccGCCGCCGGCgCCg -3'
miRNA:   3'- aacAGGG--GCUCGGCc-------------CGGCGGCCG-GG- -5'
14058 5' -67.6 NC_003521.1 + 123115 0.68 0.417908
Target:  5'- -cGUCCUC--GCCGGGCCGCUGuaCg -3'
miRNA:   3'- aaCAGGGGcuCGGCCCGGCGGCcgGg -5'
14058 5' -67.6 NC_003521.1 + 63529 0.67 0.42586
Target:  5'- -gGUCUUCGAGCCcuGGGCCcagcgucacggaGCC-GCCCu -3'
miRNA:   3'- aaCAGGGGCUCGG--CCCGG------------CGGcCGGG- -5'
14058 5' -67.6 NC_003521.1 + 129812 0.67 0.42586
Target:  5'- -cGUCaagUUGGuGCUGGGCCGCCugcugcuggGGCCCg -3'
miRNA:   3'- aaCAGg--GGCU-CGGCCCGGCGG---------CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 114503 0.67 0.42586
Target:  5'- cUGUCC----GUCGuGGCCGCCGuGCCCa -3'
miRNA:   3'- aACAGGggcuCGGC-CCGGCGGC-CGGG- -5'
14058 5' -67.6 NC_003521.1 + 118201 0.67 0.433902
Target:  5'- -cGgggCCgCCGAGCgCGcGGCCGCC-GCCg -3'
miRNA:   3'- aaCa--GG-GGCUCG-GC-CCGGCGGcCGGg -5'
14058 5' -67.6 NC_003521.1 + 201666 0.67 0.433902
Target:  5'- cUGggCCgCGAGCUGcGCCGCCGGUg- -3'
miRNA:   3'- aACa-GGgGCUCGGCcCGGCGGCCGgg -5'
14058 5' -67.6 NC_003521.1 + 145857 0.67 0.442031
Target:  5'- -cGUCUCUGGGCCcGGCgGCgggCGGCgCCg -3'
miRNA:   3'- aaCAGGGGCUCGGcCCGgCG---GCCG-GG- -5'
14058 5' -67.6 NC_003521.1 + 137152 0.67 0.442031
Target:  5'- --cUCgCCCGccauGGCCGcGGCCGCagCGGCCg -3'
miRNA:   3'- aacAG-GGGC----UCGGC-CCGGCG--GCCGGg -5'
14058 5' -67.6 NC_003521.1 + 148623 0.67 0.442031
Target:  5'- -cGUCgCgCG-GCCGGGCgGCgaaaaaCGGCCCc -3'
miRNA:   3'- aaCAGgG-GCuCGGCCCGgCG------GCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 222219 0.67 0.458544
Target:  5'- cUUGUCCugaCCGcGGCUGGGCCGCaGGaaCCa -3'
miRNA:   3'- -AACAGG---GGC-UCGGCCCGGCGgCCg-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.