Results 141 - 154 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14058 | 5' | -67.6 | NC_003521.1 | + | 123115 | 0.68 | 0.417908 |
Target: 5'- -cGUCCUC--GCCGGGCCGCUGuaCg -3' miRNA: 3'- aaCAGGGGcuCGGCCCGGCGGCcgGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 63529 | 0.67 | 0.42586 |
Target: 5'- -gGUCUUCGAGCCcuGGGCCcagcgucacggaGCC-GCCCu -3' miRNA: 3'- aaCAGGGGCUCGG--CCCGG------------CGGcCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 129812 | 0.67 | 0.42586 |
Target: 5'- -cGUCaagUUGGuGCUGGGCCGCCugcugcuggGGCCCg -3' miRNA: 3'- aaCAGg--GGCU-CGGCCCGGCGG---------CCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 114503 | 0.67 | 0.42586 |
Target: 5'- cUGUCC----GUCGuGGCCGCCGuGCCCa -3' miRNA: 3'- aACAGGggcuCGGC-CCGGCGGC-CGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 118201 | 0.67 | 0.433902 |
Target: 5'- -cGgggCCgCCGAGCgCGcGGCCGCC-GCCg -3' miRNA: 3'- aaCa--GG-GGCUCG-GC-CCGGCGGcCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 201666 | 0.67 | 0.433902 |
Target: 5'- cUGggCCgCGAGCUGcGCCGCCGGUg- -3' miRNA: 3'- aACa-GGgGCUCGGCcCGGCGGCCGgg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 145857 | 0.67 | 0.442031 |
Target: 5'- -cGUCUCUGGGCCcGGCgGCgggCGGCgCCg -3' miRNA: 3'- aaCAGGGGCUCGGcCCGgCG---GCCG-GG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 137152 | 0.67 | 0.442031 |
Target: 5'- --cUCgCCCGccauGGCCGcGGCCGCagCGGCCg -3' miRNA: 3'- aacAG-GGGC----UCGGC-CCGGCG--GCCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 148623 | 0.67 | 0.442031 |
Target: 5'- -cGUCgCgCG-GCCGGGCgGCgaaaaaCGGCCCc -3' miRNA: 3'- aaCAGgG-GCuCGGCCCGgCG------GCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 222219 | 0.67 | 0.458544 |
Target: 5'- cUUGUCCugaCCGcGGCUGGGCCGCaGGaaCCa -3' miRNA: 3'- -AACAGG---GGC-UCGGCCCGGCGgCCg-GG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 55240 | 0.67 | 0.458544 |
Target: 5'- -aG-CCCCGAGCgGcucGCCGgCGaGCCCg -3' miRNA: 3'- aaCaGGGGCUCGgCc--CGGCgGC-CGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 202594 | 0.67 | 0.458544 |
Target: 5'- -cG-CCCCGcccGCCGaGGCCGCCcugcGCCUc -3' miRNA: 3'- aaCaGGGGCu--CGGC-CCGGCGGc---CGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 164002 | 0.67 | 0.466922 |
Target: 5'- -cGUCCUCu--UCGGGCCgaGCCGGUCCc -3' miRNA: 3'- aaCAGGGGcucGGCCCGG--CGGCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 73888 | 0.66 | 0.527605 |
Target: 5'- ----gCCCGAGauCCGcaaGGCCGUgGGCCCc -3' miRNA: 3'- aacagGGGCUC--GGC---CCGGCGgCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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