miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14058 5' -67.6 NC_003521.1 + 163 0.72 0.235047
Target:  5'- -aGUCCCCGcGaCGacCCGCCGGCCCg -3'
miRNA:   3'- aaCAGGGGCuCgGCccGGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 1155 0.74 0.175395
Target:  5'- -cGUCCCCGGGagccaCGGcGCCGCCuacgggacuggacGGCCUg -3'
miRNA:   3'- aaCAGGGGCUCg----GCC-CGGCGG-------------CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 1383 0.68 0.379542
Target:  5'- cUGUCCCCGAGCCcGcGCUGCUGcggacGCUg -3'
miRNA:   3'- aACAGGGGCUCGGcC-CGGCGGC-----CGGg -5'
14058 5' -67.6 NC_003521.1 + 1439 0.67 0.433902
Target:  5'- cUGggCCgCGAGCUGcGCCGCCGGUg- -3'
miRNA:   3'- aACa-GGgGCUCGGCcCGGCGGCCGgg -5'
14058 5' -67.6 NC_003521.1 + 2059 0.73 0.205845
Target:  5'- gUGUCCCCaccucugucGAGCU---CCGCCGGCCCg -3'
miRNA:   3'- aACAGGGG---------CUCGGcccGGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 2367 0.67 0.458544
Target:  5'- -cG-CCCCGcccGCCGaGGCCGCCcugcGCCUc -3'
miRNA:   3'- aaCaGGGGCu--CGGC-CCGGCGGc---CGGG- -5'
14058 5' -67.6 NC_003521.1 + 2456 0.66 0.526716
Target:  5'- --aUCCCCGcGCCccgcuauGGGUacgcgacggCGCCGGCCa -3'
miRNA:   3'- aacAGGGGCuCGG-------CCCG---------GCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 4550 0.78 0.091291
Target:  5'- -gGUCCCCGgggagucacuacGGCCGGGgcacaCGCCGGCCUc -3'
miRNA:   3'- aaCAGGGGC------------UCGGCCCg----GCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 11925 0.76 0.115778
Target:  5'- -aGUCCCCcAGCCGGGCCcgGCUGGUgCu -3'
miRNA:   3'- aaCAGGGGcUCGGCCCGG--CGGCCGgG- -5'
14058 5' -67.6 NC_003521.1 + 13195 0.67 0.450246
Target:  5'- gUGcCgCUCGGGCCgccguguuggaGGGCCGaCCGGCgCCc -3'
miRNA:   3'- aACaG-GGGCUCGG-----------CCCGGC-GGCCG-GG- -5'
14058 5' -67.6 NC_003521.1 + 13308 0.66 0.492518
Target:  5'- --aUCCaacaUGAGCCuGGGCUGCCuGCCg -3'
miRNA:   3'- aacAGGg---GCUCGG-CCCGGCGGcCGGg -5'
14058 5' -67.6 NC_003521.1 + 15235 0.67 0.466922
Target:  5'- -----gCCGAGCgCGaGGCCGCCGaGCgCCa -3'
miRNA:   3'- aacaggGGCUCG-GC-CCGGCGGC-CG-GG- -5'
14058 5' -67.6 NC_003521.1 + 16807 0.72 0.215213
Target:  5'- -cG-CCCCGAccGCCGGGcCCGCCGcuGCCg -3'
miRNA:   3'- aaCaGGGGCU--CGGCCC-GGCGGC--CGGg -5'
14058 5' -67.6 NC_003521.1 + 17351 0.69 0.329262
Target:  5'- ---cUCCCGGGCCGugacgccGGCgCGgCGGCCCa -3'
miRNA:   3'- aacaGGGGCUCGGC-------CCG-GCgGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 17414 0.7 0.316669
Target:  5'- uUUGaCgCCGcGCCGGGgCGCCacacGGCCCg -3'
miRNA:   3'- -AACaGgGGCuCGGCCCgGCGG----CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 22387 0.67 0.42586
Target:  5'- aUGUCCuCCGugguGCCGccgcuGUCGCUGGCCa -3'
miRNA:   3'- aACAGG-GGCu---CGGCc----CGGCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 25618 0.67 0.458544
Target:  5'- --cUUCaCCGGGCUGGcGCUGCUGGCgCg -3'
miRNA:   3'- aacAGG-GGCUCGGCC-CGGCGGCCGgG- -5'
14058 5' -67.6 NC_003521.1 + 29707 0.7 0.285277
Target:  5'- -cGUCCUCGGcGCCuGGCUGCUGaGCCUc -3'
miRNA:   3'- aaCAGGGGCU-CGGcCCGGCGGC-CGGG- -5'
14058 5' -67.6 NC_003521.1 + 32878 0.7 0.303808
Target:  5'- uUUGgcgCCCgCGccGCCGGugcuGCCGCCGuGCCCg -3'
miRNA:   3'- -AACa--GGG-GCu-CGGCC----CGGCGGC-CGGG- -5'
14058 5' -67.6 NC_003521.1 + 35604 0.68 0.387024
Target:  5'- -gGUCCCCuGAuCCGc-CUGCCGGCCCu -3'
miRNA:   3'- aaCAGGGG-CUcGGCccGGCGGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.