Results 21 - 40 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14058 | 5' | -67.6 | NC_003521.1 | + | 144872 | 0.66 | 0.518741 |
Target: 5'- -gGUCCCCGAaccGCauccgugaGGGCUcugauCCGGCUCg -3' miRNA: 3'- aaCAGGGGCU---CGg-------CCCGGc----GGCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 101370 | 0.66 | 0.517857 |
Target: 5'- -aGUCCCgggugcgCGAGCCGucgcGCCGCuugaCGGCCa -3' miRNA: 3'- aaCAGGG-------GCUCGGCc---CGGCG----GCCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 155336 | 0.66 | 0.509935 |
Target: 5'- -gGUCCCggcggGGGCgCGGGCa-CCGGCaCCa -3' miRNA: 3'- aaCAGGGg----CUCG-GCCCGgcGGCCG-GG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 117655 | 0.66 | 0.509935 |
Target: 5'- cUGcgCCgCGAGaCGGuG-CGCCGGCCCu -3' miRNA: 3'- aACa-GGgGCUCgGCC-CgGCGGCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 149053 | 0.66 | 0.509935 |
Target: 5'- -cGUgCCCGcGCUGGGCUucgacgcgGCCGcGCUCu -3' miRNA: 3'- aaCAgGGGCuCGGCCCGG--------CGGC-CGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 153477 | 0.66 | 0.509058 |
Target: 5'- --cUCCUCGGGCuccggcuCGGGCCGuCUGGUCa -3' miRNA: 3'- aacAGGGGCUCG-------GCCCGGC-GGCCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 81712 | 0.66 | 0.501193 |
Target: 5'- -cGUCCCaggaGAGCaCGGaGUCGCCccgcuccaaaaaGGCCa -3' miRNA: 3'- aaCAGGGg---CUCG-GCC-CGGCGG------------CCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 91384 | 0.66 | 0.501193 |
Target: 5'- ---aCCCCGGGcCCGGacccCCGacccaaaucCCGGCCCa -3' miRNA: 3'- aacaGGGGCUC-GGCCc---GGC---------GGCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 120992 | 0.66 | 0.501193 |
Target: 5'- -cGUCCUCgucgGAGUCGGaGCCGCUGcUCCa -3' miRNA: 3'- aaCAGGGG----CUCGGCC-CGGCGGCcGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 214687 | 0.66 | 0.501193 |
Target: 5'- --uUCUCCGAaaGaaGGGCggaagcaGCCGGCCCg -3' miRNA: 3'- aacAGGGGCU--CggCCCGg------CGGCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 60804 | 0.66 | 0.501193 |
Target: 5'- -gGUCCCgucuccuaCGAGCC--GCUGCUGGCCUu -3' miRNA: 3'- aaCAGGG--------GCUCGGccCGGCGGCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 43319 | 0.66 | 0.497715 |
Target: 5'- --uUCCCCGGaacgaacacugcuCCGcGCCGuCCGGCCCg -3' miRNA: 3'- aacAGGGGCUc------------GGCcCGGC-GGCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 13308 | 0.66 | 0.492518 |
Target: 5'- --aUCCaacaUGAGCCuGGGCUGCCuGCCg -3' miRNA: 3'- aacAGGg---GCUCGG-CCCGGCGGcCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 181199 | 0.66 | 0.492518 |
Target: 5'- -cGcCUgCGAGCCGcGGUCGCCgccggGGCCg -3' miRNA: 3'- aaCaGGgGCUCGGC-CCGGCGG-----CCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 213444 | 0.66 | 0.492518 |
Target: 5'- --aUCCCCGuGGCCuGGCCccCCGGCUg -3' miRNA: 3'- aacAGGGGC-UCGGcCCGGc-GGCCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 196965 | 0.66 | 0.491654 |
Target: 5'- ----gCCCGggagccGGCCGGGgCGCCugugacgGGCCCg -3' miRNA: 3'- aacagGGGC------UCGGCCCgGCGG-------CCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 106105 | 0.66 | 0.483912 |
Target: 5'- -aGgCCUCGGGCaCGGGCgUGgCGGCCg -3' miRNA: 3'- aaCaGGGGCUCG-GCCCG-GCgGCCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 92179 | 0.66 | 0.483912 |
Target: 5'- --aUCCCCGccgAGCUcgGGGCCGuuuuucgccgcCCGGCCg -3' miRNA: 3'- aacAGGGGC---UCGG--CCCGGC-----------GGCCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 167668 | 0.66 | 0.483912 |
Target: 5'- -gGUCgcaggCCGAGgCGGcGCCGCCGccgcuGCCCc -3' miRNA: 3'- aaCAGg----GGCUCgGCC-CGGCGGC-----CGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 209321 | 0.67 | 0.475379 |
Target: 5'- cUUG-CCCaCGGGCUGGGCCuguGCCaaCCCg -3' miRNA: 3'- -AACaGGG-GCUCGGCCCGG---CGGccGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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