miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14059 3' -60.1 NC_003521.1 + 239387 0.66 0.867843
Target:  5'- gUUGCUAGGcGGCGUuCCCUGGUGu- -3'
miRNA:   3'- gGACGGUCCcCCGCAuGGGGUCAUcc -5'
14059 3' -60.1 NC_003521.1 + 235709 0.68 0.772551
Target:  5'- ----aCAGGGGGCGUaGCCCgAGUAa- -3'
miRNA:   3'- ggacgGUCCCCCGCA-UGGGgUCAUcc -5'
14059 3' -60.1 NC_003521.1 + 233443 0.66 0.867843
Target:  5'- --gGCCGGGcaGGGCGUAacguaCCCAGgagacGGa -3'
miRNA:   3'- ggaCGGUCC--CCCGCAUg----GGGUCau---CC- -5'
14059 3' -60.1 NC_003521.1 + 219422 0.71 0.594674
Target:  5'- gCUGCCAGaGGGcCGUAUCCCAGc--- -3'
miRNA:   3'- gGACGGUCcCCC-GCAUGGGGUCaucc -5'
14059 3' -60.1 NC_003521.1 + 218548 0.67 0.806664
Target:  5'- gCUGCCAGGcGaGGCGUgguagACCCCGa---- -3'
miRNA:   3'- gGACGGUCC-C-CCGCA-----UGGGGUcaucc -5'
14059 3' -60.1 NC_003521.1 + 202739 0.67 0.789856
Target:  5'- --cGgCAGGGGcGCGgggACCCCGuGUGGa -3'
miRNA:   3'- ggaCgGUCCCC-CGCa--UGGGGU-CAUCc -5'
14059 3' -60.1 NC_003521.1 + 195646 0.67 0.805836
Target:  5'- uCCgagGCCAGGGagucGcaccaccacuuacGCGUGCgguCCCAGUAGGu -3'
miRNA:   3'- -GGa--CGGUCCC----C-------------CGCAUG---GGGUCAUCC- -5'
14059 3' -60.1 NC_003521.1 + 172774 0.68 0.767272
Target:  5'- gCUGCCAccGGGGGCGccgcggaccacgccGCCCguGgcGGu -3'
miRNA:   3'- gGACGGU--CCCCCGCa-------------UGGGguCauCC- -5'
14059 3' -60.1 NC_003521.1 + 150492 1.12 0.001419
Target:  5'- cCCUGCCAGGGGGCGUACCCCAGUAGGg -3'
miRNA:   3'- -GGACGGUCCCCCGCAUGGGGUCAUCC- -5'
14059 3' -60.1 NC_003521.1 + 150461 0.69 0.690117
Target:  5'- uCCUGguCUGGGGcGGCGaGCgCCUGGUGGGg -3'
miRNA:   3'- -GGAC--GGUCCC-CCGCaUG-GGGUCAUCC- -5'
14059 3' -60.1 NC_003521.1 + 135991 0.66 0.853555
Target:  5'- gCgUGUCGGGGGGCcgcGUcacGCCCguGUucucGGGg -3'
miRNA:   3'- -GgACGGUCCCCCG---CA---UGGGguCA----UCC- -5'
14059 3' -60.1 NC_003521.1 + 129836 0.69 0.7275
Target:  5'- gCUGCUGGGGcccguGGcCGUGCCCUgcuacugcgacgAGUGGGu -3'
miRNA:   3'- gGACGGUCCC-----CC-GCAUGGGG------------UCAUCC- -5'
14059 3' -60.1 NC_003521.1 + 124190 0.66 0.838565
Target:  5'- gCCUGCCGgcuGGGGGUGagcggGCCCUuucuGGc -3'
miRNA:   3'- -GGACGGU---CCCCCGCa----UGGGGucauCC- -5'
14059 3' -60.1 NC_003521.1 + 119799 0.69 0.690117
Target:  5'- uCCggcGCCAGcGGGGCGacacggUggugcgcacGCCCCAGUGGu -3'
miRNA:   3'- -GGa--CGGUC-CCCCGC------A---------UGGGGUCAUCc -5'
14059 3' -60.1 NC_003521.1 + 117496 0.71 0.575675
Target:  5'- gCCUGuCCGGcGGGGCGUacggcgguaugcACUCC-GUGGGc -3'
miRNA:   3'- -GGAC-GGUC-CCCCGCA------------UGGGGuCAUCC- -5'
14059 3' -60.1 NC_003521.1 + 113341 0.67 0.814863
Target:  5'- --cGCCGGGGGGC---UUCCAGgGGGa -3'
miRNA:   3'- ggaCGGUCCCCCGcauGGGGUCaUCC- -5'
14059 3' -60.1 NC_003521.1 + 112699 0.68 0.781262
Target:  5'- uCCUGCU-GGGGGUGgucaacGCCCUAG-AGa -3'
miRNA:   3'- -GGACGGuCCCCCGCa-----UGGGGUCaUCc -5'
14059 3' -60.1 NC_003521.1 + 101813 0.68 0.754807
Target:  5'- --aGcCCAGGGGGCGgu-CgCGGUAGGc -3'
miRNA:   3'- ggaC-GGUCCCCCGCaugGgGUCAUCC- -5'
14059 3' -60.1 NC_003521.1 + 92080 0.73 0.483557
Target:  5'- aCCggggGUCGGGGGGUgcgcagggcgGUGCCCCGGgucGGa -3'
miRNA:   3'- -GGa---CGGUCCCCCG----------CAUGGGGUCau-CC- -5'
14059 3' -60.1 NC_003521.1 + 90288 0.75 0.36058
Target:  5'- --cGCCcccguAGGGGGgGUACCCCGGUAa- -3'
miRNA:   3'- ggaCGG-----UCCCCCgCAUGGGGUCAUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.