Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14059 | 5' | -58.5 | NC_003521.1 | + | 149993 | 0.66 | 0.911314 |
Target: 5'- cUCUauUgGGGGUGCCUCCCaucccCGGg -3' miRNA: 3'- aAGAauGgCCCCAUGGGGGGgau--GCC- -5' |
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14059 | 5' | -58.5 | NC_003521.1 | + | 190898 | 0.66 | 0.901944 |
Target: 5'- gUCc--CCGGGGaagcUGCCgCCCCCUcuccuuucuuacguaGCGGg -3' miRNA: 3'- aAGaauGGCCCC----AUGG-GGGGGA---------------UGCC- -5' |
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14059 | 5' | -58.5 | NC_003521.1 | + | 148028 | 0.66 | 0.899517 |
Target: 5'- ----gACCGGGGaacgaaACCCCCCauuuuCGGa -3' miRNA: 3'- aagaaUGGCCCCa-----UGGGGGGgau--GCC- -5' |
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14059 | 5' | -58.5 | NC_003521.1 | + | 193246 | 0.66 | 0.88688 |
Target: 5'- ----cGCCuGGGGUACCCCggaUACGGu -3' miRNA: 3'- aagaaUGG-CCCCAUGGGGgggAUGCC- -5' |
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14059 | 5' | -58.5 | NC_003521.1 | + | 75987 | 0.66 | 0.88688 |
Target: 5'- gUCUggcGCCGGccgccGGUuccuCCUCCCCcGCGGg -3' miRNA: 3'- aAGAa--UGGCC-----CCAu---GGGGGGGaUGCC- -5' |
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14059 | 5' | -58.5 | NC_003521.1 | + | 141831 | 0.67 | 0.87343 |
Target: 5'- ----gACCGcGGUACCUCCCCUgACGc -3' miRNA: 3'- aagaaUGGCcCCAUGGGGGGGA-UGCc -5' |
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14059 | 5' | -58.5 | NC_003521.1 | + | 204665 | 0.67 | 0.87343 |
Target: 5'- -cCgu-CCGGGGUGuCCUCCuCCU-CGGg -3' miRNA: 3'- aaGaauGGCCCCAU-GGGGG-GGAuGCC- -5' |
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14059 | 5' | -58.5 | NC_003521.1 | + | 35171 | 0.67 | 0.844226 |
Target: 5'- cUUUUAUauGGGUuuuACCCCCCUUuCGGa -3' miRNA: 3'- aAGAAUGgcCCCA---UGGGGGGGAuGCC- -5' |
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14059 | 5' | -58.5 | NC_003521.1 | + | 92049 | 0.71 | 0.674245 |
Target: 5'- gUCc--CCGGGGUGCCUCCCgUagcgaugGCGGa -3' miRNA: 3'- aAGaauGGCCCCAUGGGGGGgA-------UGCC- -5' |
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14059 | 5' | -58.5 | NC_003521.1 | + | 90331 | 0.75 | 0.457657 |
Target: 5'- ---cUACUGGGGUACgCCCCCUGgcaGGg -3' miRNA: 3'- aagaAUGGCCCCAUGgGGGGGAUg--CC- -5' |
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14059 | 5' | -58.5 | NC_003521.1 | + | 150529 | 1.08 | 0.003238 |
Target: 5'- uUUCUUACCGGGGUACCCCCCCUACGGg -3' miRNA: 3'- -AAGAAUGGCCCCAUGGGGGGGAUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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