miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14059 5' -58.5 NC_003521.1 + 149993 0.66 0.911314
Target:  5'- cUCUauUgGGGGUGCCUCCCaucccCGGg -3'
miRNA:   3'- aAGAauGgCCCCAUGGGGGGgau--GCC- -5'
14059 5' -58.5 NC_003521.1 + 190898 0.66 0.901944
Target:  5'- gUCc--CCGGGGaagcUGCCgCCCCCUcuccuuucuuacguaGCGGg -3'
miRNA:   3'- aAGaauGGCCCC----AUGG-GGGGGA---------------UGCC- -5'
14059 5' -58.5 NC_003521.1 + 148028 0.66 0.899517
Target:  5'- ----gACCGGGGaacgaaACCCCCCauuuuCGGa -3'
miRNA:   3'- aagaaUGGCCCCa-----UGGGGGGgau--GCC- -5'
14059 5' -58.5 NC_003521.1 + 193246 0.66 0.88688
Target:  5'- ----cGCCuGGGGUACCCCggaUACGGu -3'
miRNA:   3'- aagaaUGG-CCCCAUGGGGgggAUGCC- -5'
14059 5' -58.5 NC_003521.1 + 75987 0.66 0.88688
Target:  5'- gUCUggcGCCGGccgccGGUuccuCCUCCCCcGCGGg -3'
miRNA:   3'- aAGAa--UGGCC-----CCAu---GGGGGGGaUGCC- -5'
14059 5' -58.5 NC_003521.1 + 141831 0.67 0.87343
Target:  5'- ----gACCGcGGUACCUCCCCUgACGc -3'
miRNA:   3'- aagaaUGGCcCCAUGGGGGGGA-UGCc -5'
14059 5' -58.5 NC_003521.1 + 204665 0.67 0.87343
Target:  5'- -cCgu-CCGGGGUGuCCUCCuCCU-CGGg -3'
miRNA:   3'- aaGaauGGCCCCAU-GGGGG-GGAuGCC- -5'
14059 5' -58.5 NC_003521.1 + 35171 0.67 0.844226
Target:  5'- cUUUUAUauGGGUuuuACCCCCCUUuCGGa -3'
miRNA:   3'- aAGAAUGgcCCCA---UGGGGGGGAuGCC- -5'
14059 5' -58.5 NC_003521.1 + 92049 0.71 0.674245
Target:  5'- gUCc--CCGGGGUGCCUCCCgUagcgaugGCGGa -3'
miRNA:   3'- aAGaauGGCCCCAUGGGGGGgA-------UGCC- -5'
14059 5' -58.5 NC_003521.1 + 90331 0.75 0.457657
Target:  5'- ---cUACUGGGGUACgCCCCCUGgcaGGg -3'
miRNA:   3'- aagaAUGGCCCCAUGgGGGGGAUg--CC- -5'
14059 5' -58.5 NC_003521.1 + 150529 1.08 0.003238
Target:  5'- uUUCUUACCGGGGUACCCCCCCUACGGg -3'
miRNA:   3'- -AAGAAUGGCCCCAUGGGGGGGAUGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.