miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1406 5' -57 NC_001335.1 + 30863 0.65 0.611117
Target:  5'- aAUCAGG-GCAGCGAGCaguucauugacGGAguaCGCCa -3'
miRNA:   3'- -UGGUCUaCGUCGCUCGgaa--------CCU---GCGG- -5'
1406 5' -57 NC_001335.1 + 35846 0.66 0.604529
Target:  5'- cCUGGAacaaGUcGCGGGCCUUGGcCGCUc -3'
miRNA:   3'- uGGUCUa---CGuCGCUCGGAACCuGCGG- -5'
1406 5' -57 NC_001335.1 + 29328 0.66 0.604529
Target:  5'- uCCAGuccgacgacgGCAGCGucugcGCCg-GGAUGCCg -3'
miRNA:   3'- uGGUCua--------CGUCGCu----CGGaaCCUGCGG- -5'
1406 5' -57 NC_001335.1 + 22224 0.66 0.59357
Target:  5'- uUCAGGaaCAGCGGGCCgucUUGGAgCGCg -3'
miRNA:   3'- uGGUCUacGUCGCUCGG---AACCU-GCGg -5'
1406 5' -57 NC_001335.1 + 34388 0.66 0.590288
Target:  5'- gGCCGGAUGCGGCucacgucguacacccGCUgguagUGGACcguGCCg -3'
miRNA:   3'- -UGGUCUACGUCGcu-------------CGGa----ACCUG---CGG- -5'
1406 5' -57 NC_001335.1 + 11460 0.67 0.550141
Target:  5'- cGCCGGucUGC-GCGA-CCUUGGggucguucACGCCg -3'
miRNA:   3'- -UGGUCu-ACGuCGCUcGGAACC--------UGCGG- -5'
1406 5' -57 NC_001335.1 + 14825 0.67 0.550141
Target:  5'- aACCGGAcggGCAGCGcAGCCaggucaucgaUGGGCaGCUc -3'
miRNA:   3'- -UGGUCUa--CGUCGC-UCGGa---------ACCUG-CGG- -5'
1406 5' -57 NC_001335.1 + 25124 0.67 0.539427
Target:  5'- cACCAGGgaucuguaCAGCGGGCaCgcGGAgCGCCg -3'
miRNA:   3'- -UGGUCUac------GUCGCUCG-GaaCCU-GCGG- -5'
1406 5' -57 NC_001335.1 + 4119 0.67 0.496317
Target:  5'- uGCCAGcgGCAGCG-GUUggGGAUcuugucgGCCu -3'
miRNA:   3'- -UGGUCuaCGUCGCuCGGaaCCUG-------CGG- -5'
1406 5' -57 NC_001335.1 + 51392 0.67 0.494253
Target:  5'- uACCGGAUGUuucgguggcugucaAGCGGGCCguuUUGGuguugcaacgAUGCCc -3'
miRNA:   3'- -UGGUCUACG--------------UCGCUCGG---AACC----------UGCGG- -5'
1406 5' -57 NC_001335.1 + 21288 0.68 0.487058
Target:  5'- cCCGGAUGC-GUGAucGCCcc-GACGCCa -3'
miRNA:   3'- uGGUCUACGuCGCU--CGGaacCUGCGG- -5'
1406 5' -57 NC_001335.1 + 11878 0.69 0.399529
Target:  5'- uCCGGGUccacCAGCGAGaccuCCUUGGugGUCu -3'
miRNA:   3'- uGGUCUAc---GUCGCUC----GGAACCugCGG- -5'
1406 5' -57 NC_001335.1 + 6075 0.69 0.399529
Target:  5'- gGCCGGcuacucGCAGgGAGCCaucgUGGugGgCCa -3'
miRNA:   3'- -UGGUCua----CGUCgCUCGGa---ACCugC-GG- -5'
1406 5' -57 NC_001335.1 + 37482 0.7 0.337163
Target:  5'- -aCGGA--CAGCGAGCCcaggacuacggGGACGCCa -3'
miRNA:   3'- ugGUCUacGUCGCUCGGaa---------CCUGCGG- -5'
1406 5' -57 NC_001335.1 + 31681 0.71 0.3149
Target:  5'- gGCCucGUGcCAGCGGGCCUUGauGACGUa -3'
miRNA:   3'- -UGGucUAC-GUCGCUCGGAAC--CUGCGg -5'
1406 5' -57 NC_001335.1 + 42399 0.71 0.3149
Target:  5'- aGCCGGGUGCcGCGcAGCUUgaggaucuucaUGGuCGCCc -3'
miRNA:   3'- -UGGUCUACGuCGC-UCGGA-----------ACCuGCGG- -5'
1406 5' -57 NC_001335.1 + 13376 0.71 0.307222
Target:  5'- cCCAGAUcgaGUGGCGAGaCCagcggUGGGCGCUc -3'
miRNA:   3'- uGGUCUA---CGUCGCUC-GGa----ACCUGCGG- -5'
1406 5' -57 NC_001335.1 + 50758 0.79 0.086062
Target:  5'- gGCCGGggGCGGCGcaCCUUGGGCGCg -3'
miRNA:   3'- -UGGUCuaCGUCGCucGGAACCUGCGg -5'
1406 5' -57 NC_001335.1 + 42445 1.12 0.000356
Target:  5'- aACCAGAUGCAGCGAGCCUUGGACGCCg -3'
miRNA:   3'- -UGGUCUACGUCGCUCGGAACCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.