miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14060 3' -60.5 NC_003521.1 + 171949 0.67 0.823051
Target:  5'- cUCGCCCCUCaucacaagaGGuacaGGaACCGUAaCCGGu -3'
miRNA:   3'- -GGCGGGGAGg--------CC----CCaUGGCAUaGGCC- -5'
14060 3' -60.5 NC_003521.1 + 164518 0.67 0.815152
Target:  5'- gCCGCCaCCUCCGc--UGCCGgacCCGGa -3'
miRNA:   3'- -GGCGG-GGAGGCcccAUGGCauaGGCC- -5'
14060 3' -60.5 NC_003521.1 + 170021 0.67 0.815152
Target:  5'- gCGCCUCUUCGGGccGCUGUgcGUCCa- -3'
miRNA:   3'- gGCGGGGAGGCCCcaUGGCA--UAGGcc -5'
14060 3' -60.5 NC_003521.1 + 166492 0.67 0.815152
Target:  5'- gCGCCauCCagCGGGGcGCCGcGUCCGa -3'
miRNA:   3'- gGCGG--GGagGCCCCaUGGCaUAGGCc -5'
14060 3' -60.5 NC_003521.1 + 23225 0.67 0.807113
Target:  5'- aCGCCCCugcuggUCCGGGGcggACCcgggGUCCu- -3'
miRNA:   3'- gGCGGGG------AGGCCCCa--UGGca--UAGGcc -5'
14060 3' -60.5 NC_003521.1 + 117614 0.67 0.807113
Target:  5'- gCCGCCCCcgUCCuacccGGcGCCGUAUgCGGc -3'
miRNA:   3'- -GGCGGGG--AGGcc---CCaUGGCAUAgGCC- -5'
14060 3' -60.5 NC_003521.1 + 146829 0.68 0.790639
Target:  5'- uCCGCCUgUCUGGGGggcGCCucGUCCu- -3'
miRNA:   3'- -GGCGGGgAGGCCCCa--UGGcaUAGGcc -5'
14060 3' -60.5 NC_003521.1 + 92249 0.68 0.790639
Target:  5'- cCCGUcgaCCCUCCcuGGGUGCCGcugCCGc -3'
miRNA:   3'- -GGCG---GGGAGGc-CCCAUGGCauaGGCc -5'
14060 3' -60.5 NC_003521.1 + 107450 0.68 0.782219
Target:  5'- aCCGCCgCgcugugCCGGcGG-ACCGUgcugaucuccacGUCCGGc -3'
miRNA:   3'- -GGCGGgGa-----GGCC-CCaUGGCA------------UAGGCC- -5'
14060 3' -60.5 NC_003521.1 + 17341 0.68 0.782219
Target:  5'- uCCGCCCCaccucCCGGG---CCGUGacgCCGGc -3'
miRNA:   3'- -GGCGGGGa----GGCCCcauGGCAUa--GGCC- -5'
14060 3' -60.5 NC_003521.1 + 150134 0.68 0.782219
Target:  5'- gUGUauauaCCggagCgGGGGUauauACCGUAUCCGGg -3'
miRNA:   3'- gGCGg----GGa---GgCCCCA----UGGCAUAGGCC- -5'
14060 3' -60.5 NC_003521.1 + 160314 0.68 0.782219
Target:  5'- gCCGCCUCcCCGGGGUcAUCGU-UgUGGu -3'
miRNA:   3'- -GGCGGGGaGGCCCCA-UGGCAuAgGCC- -5'
14060 3' -60.5 NC_003521.1 + 92210 0.68 0.782219
Target:  5'- cCCGCCCCUgCUcGGGUcCCGggGUCCc- -3'
miRNA:   3'- -GGCGGGGA-GGcCCCAuGGCa-UAGGcc -5'
14060 3' -60.5 NC_003521.1 + 92470 0.68 0.773685
Target:  5'- uUGCCCgCUCgGGGGUcucccaGCCuc-UCCGGg -3'
miRNA:   3'- gGCGGG-GAGgCCCCA------UGGcauAGGCC- -5'
14060 3' -60.5 NC_003521.1 + 16805 0.68 0.773685
Target:  5'- cCCGCCCCgaccgCCGGGcccGCCGcugCCGc -3'
miRNA:   3'- -GGCGGGGa----GGCCCca-UGGCauaGGCc -5'
14060 3' -60.5 NC_003521.1 + 129635 0.68 0.765044
Target:  5'- cCCaGCCCaccgUCCGcGGcGCCGUcgCCGGg -3'
miRNA:   3'- -GG-CGGGg---AGGCcCCaUGGCAuaGGCC- -5'
14060 3' -60.5 NC_003521.1 + 174812 0.68 0.765044
Target:  5'- gCGCCCacaCGGGGUucuCCagcagcgacuugGUGUCCGGc -3'
miRNA:   3'- gGCGGGgagGCCCCAu--GG------------CAUAGGCC- -5'
14060 3' -60.5 NC_003521.1 + 152355 0.68 0.756304
Target:  5'- aCGCUgCUCUGGGG--CCGg--CCGGg -3'
miRNA:   3'- gGCGGgGAGGCCCCauGGCauaGGCC- -5'
14060 3' -60.5 NC_003521.1 + 36849 0.69 0.747471
Target:  5'- gUCGUCCUacgccUCGGcGGUGUCGUGUCCGGa -3'
miRNA:   3'- -GGCGGGGa----GGCC-CCAUGGCAUAGGCC- -5'
14060 3' -60.5 NC_003521.1 + 148656 0.69 0.73676
Target:  5'- aUCGCCCCgacccCCGGGcGaGCCGguggaaggagCCGGg -3'
miRNA:   3'- -GGCGGGGa----GGCCC-CaUGGCaua-------GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.