miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14060 5' -57.5 NC_003521.1 + 4 0.66 0.895543
Target:  5'- aUCCGGccuccgcUGCGgguCCcGGGGGGUGGg- -3'
miRNA:   3'- aAGGCC-------AUGUau-GGaUCCCCCGCCau -5'
14060 5' -57.5 NC_003521.1 + 240553 0.66 0.895543
Target:  5'- aUCCGGccuccgcUGCGgguCCcGGGGGGUGGg- -3'
miRNA:   3'- aAGGCC-------AUGUau-GGaUCCCCCGCCau -5'
14060 5' -57.5 NC_003521.1 + 40326 0.66 0.895543
Target:  5'- aUCCGGccuccgcUGCGgguCCcGGGGGGUGGg- -3'
miRNA:   3'- aAGGCC-------AUGUau-GGaUCCCCCGCCau -5'
14060 5' -57.5 NC_003521.1 + 112599 0.66 0.892309
Target:  5'- aUCUGGUACuaucGCCUcaagAGGGGGCucuacacccagcccaGGUGg -3'
miRNA:   3'- aAGGCCAUGua--UGGA----UCCCCCG---------------CCAU- -5'
14060 5' -57.5 NC_003521.1 + 97843 0.66 0.889682
Target:  5'- -gCCGGUGCG-ACagagAGGGGuGCGGg- -3'
miRNA:   3'- aaGGCCAUGUaUGga--UCCCC-CGCCau -5'
14060 5' -57.5 NC_003521.1 + 25298 0.67 0.846286
Target:  5'- -aCCGuGUAC--ACCUAcGGGGCGGUc -3'
miRNA:   3'- aaGGC-CAUGuaUGGAUcCCCCGCCAu -5'
14060 5' -57.5 NC_003521.1 + 5708 0.68 0.83837
Target:  5'- -cCCGGggGCugucuauCgCUAGGGGGUGGUAg -3'
miRNA:   3'- aaGGCCa-UGuau----G-GAUCCCCCGCCAU- -5'
14060 5' -57.5 NC_003521.1 + 150439 0.68 0.830275
Target:  5'- aUUCUagGGUACGUACCUAGGuuaGGGUcGUAu -3'
miRNA:   3'- -AAGG--CCAUGUAUGGAUCC---CCCGcCAU- -5'
14060 5' -57.5 NC_003521.1 + 150165 0.68 0.821172
Target:  5'- aUCCGGgGCGUGuccaCUAGGGGGUguaccuaGGUAc -3'
miRNA:   3'- aAGGCCaUGUAUg---GAUCCCCCG-------CCAU- -5'
14060 5' -57.5 NC_003521.1 + 98731 0.68 0.813576
Target:  5'- ---gGGUACcUGCCgcGGGGGUGGUc -3'
miRNA:   3'- aaggCCAUGuAUGGauCCCCCGCCAu -5'
14060 5' -57.5 NC_003521.1 + 90621 0.7 0.721947
Target:  5'- -aCCGGaUACgGUACCccGGaGGGGCGGUAc -3'
miRNA:   3'- aaGGCC-AUG-UAUGGa-UC-CCCCGCCAU- -5'
14060 5' -57.5 NC_003521.1 + 150306 0.71 0.652911
Target:  5'- --gUGG-GCGUACCUAGGGGGCGuGa- -3'
miRNA:   3'- aagGCCaUGUAUGGAUCCCCCGC-Cau -5'
14060 5' -57.5 NC_003521.1 + 150473 0.72 0.592997
Target:  5'- gUUCCGGUACGguguauagcccUGCC-AGGGGGCGu-- -3'
miRNA:   3'- -AAGGCCAUGU-----------AUGGaUCCCCCGCcau -5'
14060 5' -57.5 NC_003521.1 + 150247 1.04 0.006366
Target:  5'- cUUCCGGUACAUACCUAGGGGGCGGUAc -3'
miRNA:   3'- -AAGGCCAUGUAUGGAUCCCCCGCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.