miRNA display CGI


Results 21 - 40 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14063 3' -61.5 NC_003521.1 + 205769 0.66 0.778839
Target:  5'- aGACCugugugguGGCGCCgcaCGgCaUGaGCGUGCCCa -3'
miRNA:   3'- -CUGG--------UCGUGGa--GCgG-ACgCGCACGGG- -5'
14063 3' -61.5 NC_003521.1 + 140315 0.66 0.778839
Target:  5'- cACCGuGCACCguccgaCGCCcGCG-GUGCCa -3'
miRNA:   3'- cUGGU-CGUGGa-----GCGGaCGCgCACGGg -5'
14063 3' -61.5 NC_003521.1 + 203357 0.66 0.778839
Target:  5'- --gCGGCACCacggUgGCCcGCGCGcgaGCCCa -3'
miRNA:   3'- cugGUCGUGG----AgCGGaCGCGCa--CGGG- -5'
14063 3' -61.5 NC_003521.1 + 40803 0.66 0.778839
Target:  5'- -cCCGGCGCggucagcuaUUCGCCUcgGgGCGggGCCCg -3'
miRNA:   3'- cuGGUCGUG---------GAGCGGA--CgCGCa-CGGG- -5'
14063 3' -61.5 NC_003521.1 + 78230 0.66 0.778839
Target:  5'- cGACgGGCACCUUGCagaaGCGCugcacGUCCa -3'
miRNA:   3'- -CUGgUCGUGGAGCGga--CGCGca---CGGG- -5'
14063 3' -61.5 NC_003521.1 + 72567 0.66 0.776215
Target:  5'- aGAUCAGCGCCUCGUgcggcaacgcgUUccaggcgcucaagaGCGCGcUGCUCa -3'
miRNA:   3'- -CUGGUCGUGGAGCG-----------GA--------------CGCGC-ACGGG- -5'
14063 3' -61.5 NC_003521.1 + 183320 0.66 0.770054
Target:  5'- uGAUCAGCGCCgugcgCGCCgucaUGgGCaagaaGUGCCa -3'
miRNA:   3'- -CUGGUCGUGGa----GCGG----ACgCG-----CACGGg -5'
14063 3' -61.5 NC_003521.1 + 176792 0.66 0.770054
Target:  5'- -uCCAGCACCUgGUCgaugGUGCGcuccagcGCCUg -3'
miRNA:   3'- cuGGUCGUGGAgCGGa---CGCGCa------CGGG- -5'
14063 3' -61.5 NC_003521.1 + 32008 0.66 0.770054
Target:  5'- uGCaCAGCugC-CGCagguaauuggUGCGCGUGCCg -3'
miRNA:   3'- cUG-GUCGugGaGCGg---------ACGCGCACGGg -5'
14063 3' -61.5 NC_003521.1 + 143613 0.66 0.770054
Target:  5'- cACCGGCugCU-GCCUGCuGCacaacgucacgGUGCaCCg -3'
miRNA:   3'- cUGGUCGugGAgCGGACG-CG-----------CACG-GG- -5'
14063 3' -61.5 NC_003521.1 + 55240 0.66 0.770054
Target:  5'- aGCCccgAGCGgCUCGCCgGCGa--GCCCg -3'
miRNA:   3'- cUGG---UCGUgGAGCGGaCGCgcaCGGG- -5'
14063 3' -61.5 NC_003521.1 + 33424 0.66 0.770054
Target:  5'- -cCCAGCAcguagaccuuguCCUCGCCcgGCagguaggcgaagGCGUgGCCCu -3'
miRNA:   3'- cuGGUCGU------------GGAGCGGa-CG------------CGCA-CGGG- -5'
14063 3' -61.5 NC_003521.1 + 126926 0.66 0.76917
Target:  5'- cGCuCAGCAgCUCGCCuaccugcUGuCGCuGUGCCg -3'
miRNA:   3'- cUG-GUCGUgGAGCGG-------AC-GCG-CACGGg -5'
14063 3' -61.5 NC_003521.1 + 196429 0.66 0.764731
Target:  5'- aGGCCGugaggguggaauaacGCACCUCgGCCUcGgGCGUgggccgcaGCCCc -3'
miRNA:   3'- -CUGGU---------------CGUGGAG-CGGA-CgCGCA--------CGGG- -5'
14063 3' -61.5 NC_003521.1 + 18170 0.66 0.761161
Target:  5'- gGGCagcguggaGGCGCUgcgCGCCUGC-CG-GCCCu -3'
miRNA:   3'- -CUGg-------UCGUGGa--GCGGACGcGCaCGGG- -5'
14063 3' -61.5 NC_003521.1 + 2304 0.66 0.761161
Target:  5'- cGACgAGC-UCUCGCaccugCUGCGCGccgGCCUc -3'
miRNA:   3'- -CUGgUCGuGGAGCG-----GACGCGCa--CGGG- -5'
14063 3' -61.5 NC_003521.1 + 73417 0.66 0.761161
Target:  5'- --aCAGCAgCCgaagCGCCcccacuaGCGUGCCCg -3'
miRNA:   3'- cugGUCGU-GGa---GCGGacg----CGCACGGG- -5'
14063 3' -61.5 NC_003521.1 + 57394 0.66 0.761161
Target:  5'- cGAUCucGCGCCacagCGCC-GUGCGgucGCCCa -3'
miRNA:   3'- -CUGGu-CGUGGa---GCGGaCGCGCa--CGGG- -5'
14063 3' -61.5 NC_003521.1 + 202532 0.66 0.761161
Target:  5'- cGACgAGC-UCUCGCaccugCUGCGCGccgGCCUc -3'
miRNA:   3'- -CUGgUCGuGGAGCG-----GACGCGCa--CGGG- -5'
14063 3' -61.5 NC_003521.1 + 195993 0.66 0.761161
Target:  5'- cACCAGCcCCaggaGCUgugGCGUGUcGCCCu -3'
miRNA:   3'- cUGGUCGuGGag--CGGa--CGCGCA-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.