miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14063 5' -49.5 NC_003521.1 + 30170 0.67 0.999327
Target:  5'- uCACGCGUugucgcaugaGCGCGCGguugacGUAGaaGGCCGa -3'
miRNA:   3'- uGUGCGUA----------UGCGCGCa-----UAUCa-UUGGC- -5'
14063 5' -49.5 NC_003521.1 + 174168 0.67 0.999327
Target:  5'- cGCAUGCAgaucuccuggaUGCGaCGCGUcAUGGUGcucACCa -3'
miRNA:   3'- -UGUGCGU-----------AUGC-GCGCA-UAUCAU---UGGc -5'
14063 5' -49.5 NC_003521.1 + 228109 0.67 0.999327
Target:  5'- cCAgGCuguUGCGCGCGUAgc--AGCCGu -3'
miRNA:   3'- uGUgCGu--AUGCGCGCAUaucaUUGGC- -5'
14063 5' -49.5 NC_003521.1 + 31711 0.67 0.999176
Target:  5'- gGCA-GCAUGUGCGCGUGcUGGgacGCCGc -3'
miRNA:   3'- -UGUgCGUAUGCGCGCAU-AUCau-UGGC- -5'
14063 5' -49.5 NC_003521.1 + 195757 0.67 0.999176
Target:  5'- uCACGCAggACGCGCGUugccUGGCaCGa -3'
miRNA:   3'- uGUGCGUa-UGCGCGCAuaucAUUG-GC- -5'
14063 5' -49.5 NC_003521.1 + 103422 0.67 0.999176
Target:  5'- uGCGCGUcgACGUGCGUG-AGcu-CCGc -3'
miRNA:   3'- -UGUGCGuaUGCGCGCAUaUCauuGGC- -5'
14063 5' -49.5 NC_003521.1 + 68179 0.67 0.998996
Target:  5'- aGCGCGCAgaccaagcggGgGCGCGUG-AG-GACCGa -3'
miRNA:   3'- -UGUGCGUa---------UgCGCGCAUaUCaUUGGC- -5'
14063 5' -49.5 NC_003521.1 + 201249 0.67 0.998996
Target:  5'- cGCGCGCAUcACGCcGCGcagccAGaUGGCCGg -3'
miRNA:   3'- -UGUGCGUA-UGCG-CGCaua--UC-AUUGGC- -5'
14063 5' -49.5 NC_003521.1 + 90880 0.67 0.998996
Target:  5'- aGCGCGCAUGCGCaCGUug---AACUGc -3'
miRNA:   3'- -UGUGCGUAUGCGcGCAuaucaUUGGC- -5'
14063 5' -49.5 NC_003521.1 + 1021 0.67 0.998996
Target:  5'- cGCGCGCAUcACGCcGCGcagccAGaUGGCCGg -3'
miRNA:   3'- -UGUGCGUA-UGCG-CGCaua--UC-AUUGGC- -5'
14063 5' -49.5 NC_003521.1 + 103371 0.68 0.998535
Target:  5'- uGCACGCAgAC-CGUGUcgGGcAGCCGc -3'
miRNA:   3'- -UGUGCGUaUGcGCGCAuaUCaUUGGC- -5'
14063 5' -49.5 NC_003521.1 + 211712 0.68 0.998535
Target:  5'- -aGCGCA-GCGCGCGgAUGGUGcggcgaaagugcGCCa -3'
miRNA:   3'- ugUGCGUaUGCGCGCaUAUCAU------------UGGc -5'
14063 5' -49.5 NC_003521.1 + 186210 0.68 0.998244
Target:  5'- uGCACGUAgaccucgacUACGC-CGU--GGUGGCCGa -3'
miRNA:   3'- -UGUGCGU---------AUGCGcGCAuaUCAUUGGC- -5'
14063 5' -49.5 NC_003521.1 + 17342 0.68 0.998244
Target:  5'- -gGCGCA-ACGCGC---UGGUGGCCa -3'
miRNA:   3'- ugUGCGUaUGCGCGcauAUCAUUGGc -5'
14063 5' -49.5 NC_003521.1 + 87336 0.68 0.998212
Target:  5'- -gGCGCAgcUGCGCggcaagggcauccGCGUGUAcGUGGCCu -3'
miRNA:   3'- ugUGCGU--AUGCG-------------CGCAUAU-CAUUGGc -5'
14063 5' -49.5 NC_003521.1 + 106861 0.68 0.997905
Target:  5'- cCGCGCAUggACGCcCGUAcGGUGACgGu -3'
miRNA:   3'- uGUGCGUA--UGCGcGCAUaUCAUUGgC- -5'
14063 5' -49.5 NC_003521.1 + 95544 0.68 0.997905
Target:  5'- -gACGCcgGCGCGCGagcUGGccGCCGa -3'
miRNA:   3'- ugUGCGuaUGCGCGCau-AUCauUGGC- -5'
14063 5' -49.5 NC_003521.1 + 51875 0.68 0.997063
Target:  5'- cGCugGCAUugGUGuCGUugccgaaugGUAGUAACa- -3'
miRNA:   3'- -UGugCGUAugCGC-GCA---------UAUCAUUGgc -5'
14063 5' -49.5 NC_003521.1 + 137924 0.68 0.996965
Target:  5'- gGCugGCGggucgcgguucccUGCccgaggagcccgaGCGCGUGUGGUAuGCCGa -3'
miRNA:   3'- -UGugCGU-------------AUG-------------CGCGCAUAUCAU-UGGC- -5'
14063 5' -49.5 NC_003521.1 + 196099 0.69 0.996547
Target:  5'- aGCACGaaaugcgGCGCGCGgUAUAGauccGCCGg -3'
miRNA:   3'- -UGUGCgua----UGCGCGC-AUAUCau--UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.