miRNA display CGI


Results 21 - 40 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14064 3' -50.1 NC_003521.1 + 6458 0.66 0.999557
Target:  5'- cGGGAGGAGcggaugacGGCaCGGGAGGCaGGuCCGg -3'
miRNA:   3'- -CCUUCCUUu-------UCG-GUUUUCCGgCU-GGC- -5'
14064 3' -50.1 NC_003521.1 + 4252 0.66 0.999557
Target:  5'- gGGGAGGAGGA-CgAGAAGGaCGGCgGa -3'
miRNA:   3'- -CCUUCCUUUUcGgUUUUCCgGCUGgC- -5'
14064 3' -50.1 NC_003521.1 + 113344 0.66 0.999557
Target:  5'- cGGggGGcuu--CCAGGGGGaCgGGCCGg -3'
miRNA:   3'- -CCuuCCuuuucGGUUUUCC-GgCUGGC- -5'
14064 3' -50.1 NC_003521.1 + 34983 0.66 0.999452
Target:  5'- cGGcuGGGgcGAGCCGAAgaaauGGGCCucGugCGa -3'
miRNA:   3'- -CCu-UCCuuUUCGGUUU-----UCCGG--CugGC- -5'
14064 3' -50.1 NC_003521.1 + 88659 0.66 0.999452
Target:  5'- aGAGGGcc--GCCAGGucgguGGGCCGGCgGc -3'
miRNA:   3'- cCUUCCuuuuCGGUUU-----UCCGGCUGgC- -5'
14064 3' -50.1 NC_003521.1 + 52590 0.66 0.999452
Target:  5'- cGGGcagcuGGu--GGcCCGAAAGGCCGGCa- -3'
miRNA:   3'- -CCUu----CCuuuUC-GGUUUUCCGGCUGgc -5'
14064 3' -50.1 NC_003521.1 + 219410 0.66 0.999452
Target:  5'- cGAGGccGAGuagcuGCCAGAGGGCCGuauCCc -3'
miRNA:   3'- cCUUC--CUUuu---CGGUUUUCCGGCu--GGc -5'
14064 3' -50.1 NC_003521.1 + 216876 0.66 0.999452
Target:  5'- uGGAGcGGGAcauccAGGCCAuccAGGCC-ACCa -3'
miRNA:   3'- -CCUU-CCUU-----UUCGGUuu-UCCGGcUGGc -5'
14064 3' -50.1 NC_003521.1 + 98802 0.66 0.999452
Target:  5'- cGAAGaGGAGGGaCGAGGGuaCGGCCGg -3'
miRNA:   3'- cCUUC-CUUUUCgGUUUUCcgGCUGGC- -5'
14064 3' -50.1 NC_003521.1 + 47382 0.66 0.999379
Target:  5'- ---cGGAGAAGCCcgAGAaacccaaaaagcccaAGGCCGGCgGu -3'
miRNA:   3'- ccuuCCUUUUCGG--UUU---------------UCCGGCUGgC- -5'
14064 3' -50.1 NC_003521.1 + 63756 0.66 0.999379
Target:  5'- aGAGGGAgaAGAGCCAGAAccucuacaaccagcuGGCgGGCa- -3'
miRNA:   3'- cCUUCCU--UUUCGGUUUU---------------CCGgCUGgc -5'
14064 3' -50.1 NC_003521.1 + 11913 0.66 0.999326
Target:  5'- uGGAGGAGAucgagucccccAGCC---GGGCCcGGCUGg -3'
miRNA:   3'- cCUUCCUUU-----------UCGGuuuUCCGG-CUGGC- -5'
14064 3' -50.1 NC_003521.1 + 56040 0.66 0.999326
Target:  5'- gGGAGGGGAAugcuGCCcGAAGuGCagCGACgGg -3'
miRNA:   3'- -CCUUCCUUUu---CGGuUUUC-CG--GCUGgC- -5'
14064 3' -50.1 NC_003521.1 + 97856 0.66 0.999326
Target:  5'- aGAGGGGugcGGGCCAgggagaccAGGGGCCcccgcugacccuGACCGc -3'
miRNA:   3'- cCUUCCUu--UUCGGU--------UUUCCGG------------CUGGC- -5'
14064 3' -50.1 NC_003521.1 + 77658 0.66 0.999326
Target:  5'- uGGAacugccgucGGGAGAcagcaGGCCGGGGGGCaCG-CUGg -3'
miRNA:   3'- -CCU---------UCCUUU-----UCGGUUUUCCG-GCuGGC- -5'
14064 3' -50.1 NC_003521.1 + 172875 0.66 0.999326
Target:  5'- gGGAugccGAAGAGCCAAGAGcCCagGGCCa -3'
miRNA:   3'- -CCUuc--CUUUUCGGUUUUCcGG--CUGGc -5'
14064 3' -50.1 NC_003521.1 + 177963 0.66 0.999326
Target:  5'- gGGAGGGAugucuGAGGCgGGgcacaccuGGGGCgGugCGg -3'
miRNA:   3'- -CCUUCCU-----UUUCGgUU--------UUCCGgCugGC- -5'
14064 3' -50.1 NC_003521.1 + 99668 0.66 0.999298
Target:  5'- gGGAAGGGGcAGCCGuucuucucgcGGCCGAa-- -3'
miRNA:   3'- -CCUUCCUUuUCGGUuuu-------CCGGCUggc -5'
14064 3' -50.1 NC_003521.1 + 98233 0.66 0.999175
Target:  5'- gGGAGGcGggGAGgCG--GGGgCGGCCa -3'
miRNA:   3'- -CCUUC-CuuUUCgGUuuUCCgGCUGGc -5'
14064 3' -50.1 NC_003521.1 + 169056 0.66 0.999175
Target:  5'- cGGggGGAu--GCgCAAGAgacccuucugcGGCaCGACCa -3'
miRNA:   3'- -CCuuCCUuuuCG-GUUUU-----------CCG-GCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.