Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14064 | 5' | -52.7 | NC_003521.1 | + | 181885 | 0.67 | 0.978963 |
Target: 5'- gGGCcuGGuGGAGUUcgagGcGCAGCCCGGAUc -3' miRNA: 3'- -CUGu-CC-CCUUAAaa--C-CGUUGGGCCUG- -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 122766 | 0.67 | 0.978963 |
Target: 5'- gGGCAcGGGGA----UGGCGGCCgagagcaaugCGGACc -3' miRNA: 3'- -CUGU-CCCCUuaaaACCGUUGG----------GCCUG- -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 103605 | 0.68 | 0.974329 |
Target: 5'- cGCGGGGGAucugaaagaagGGCGuCCCGGcCg -3' miRNA: 3'- cUGUCCCCUuaaaa------CCGUuGGGCCuG- -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 162220 | 0.68 | 0.968391 |
Target: 5'- aGACGGGGGG----UGGUAGCgCCGacGGCg -3' miRNA: 3'- -CUGUCCCCUuaaaACCGUUG-GGC--CUG- -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 27510 | 0.69 | 0.954501 |
Target: 5'- cACGGGGGGcgU---GCGGCCCGaGGCg -3' miRNA: 3'- cUGUCCCCUuaAaacCGUUGGGC-CUG- -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 125743 | 0.69 | 0.954501 |
Target: 5'- cGCAGGGcaGggUUUcugGGCGACgUCGGGCu -3' miRNA: 3'- cUGUCCC--CuuAAAa--CCGUUG-GGCCUG- -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 7993 | 0.69 | 0.950469 |
Target: 5'- cGGCGGGGGAGguaccggGGCAGCgCCGu-- -3' miRNA: 3'- -CUGUCCCCUUaaaa---CCGUUG-GGCcug -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 148990 | 0.69 | 0.950469 |
Target: 5'- --aGGGGGGAUg--GGagagcaaAACCCGGAUg -3' miRNA: 3'- cugUCCCCUUAaaaCCg------UUGGGCCUG- -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 98236 | 0.69 | 0.950469 |
Target: 5'- aGGC-GGGGAGgcgggGGCGGCCacggCGGGCa -3' miRNA: 3'- -CUGuCCCCUUaaaa-CCGUUGG----GCCUG- -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 60696 | 0.69 | 0.950469 |
Target: 5'- cGCGGGGGAcccgggGGCGGCgCGGGu -3' miRNA: 3'- cUGUCCCCUuaaaa-CCGUUGgGCCUg -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 120741 | 0.7 | 0.941709 |
Target: 5'- -cCAGGGGcaccaggUGGCcGCCUGGAUg -3' miRNA: 3'- cuGUCCCCuuaaa--ACCGuUGGGCCUG- -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 164037 | 0.7 | 0.921338 |
Target: 5'- aGCuGGGGAAUUggUGGUGGCCuCGGcCa -3' miRNA: 3'- cUGuCCCCUUAAa-ACCGUUGG-GCCuG- -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 237405 | 0.71 | 0.89715 |
Target: 5'- uGGCGGGGGucugagUGGCcccaucCCCGGAUg -3' miRNA: 3'- -CUGUCCCCuuaaa-ACCGuu----GGGCCUG- -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 91362 | 0.71 | 0.883658 |
Target: 5'- gGACgguGGGGGAGgg--GGCcgaaccccgGGCCCGGACc -3' miRNA: 3'- -CUG---UCCCCUUaaaaCCG---------UUGGGCCUG- -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 103882 | 0.72 | 0.876575 |
Target: 5'- cGACAGGGGGAUg--GGCuGCCgcgCGGuCa -3' miRNA: 3'- -CUGUCCCCUUAaaaCCGuUGG---GCCuG- -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 148632 | 0.72 | 0.850888 |
Target: 5'- gGGCGGGGGAGgggaggccagGGCAucgccccgaccCCCGGGCg -3' miRNA: 3'- -CUGUCCCCUUaaaa------CCGUu----------GGGCCUG- -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 148397 | 0.73 | 0.829683 |
Target: 5'- aGGCuGGGGggUgagGGCuccACCCGGGu -3' miRNA: 3'- -CUGuCCCCuuAaaaCCGu--UGGGCCUg -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 40896 | 0.73 | 0.816021 |
Target: 5'- gGGCGGGGGucAGUUUaauagcgaggcgggGGCGGCCCGGGg -3' miRNA: 3'- -CUGUCCCC--UUAAAa-------------CCGUUGGGCCUg -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 148321 | 0.73 | 0.803713 |
Target: 5'- aGCGGGGGugaggUGGCGgaccacGCCCGGAg -3' miRNA: 3'- cUGUCCCCuuaaaACCGU------UGGGCCUg -5' |
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14064 | 5' | -52.7 | NC_003521.1 | + | 147166 | 1.09 | 0.009108 |
Target: 5'- gGACAGGGGAAUUUUGGCAACCCGGACc -3' miRNA: 3'- -CUGUCCCCUUAAAACCGUUGGGCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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