miRNA display CGI


Results 21 - 40 of 91 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14065 5' -54.8 NC_003521.1 + 111221 0.66 0.980877
Target:  5'- gCCGGAaaGUGGGCGacacgggUCACAagUCGCGCc- -3'
miRNA:   3'- -GGCCUa-CGCCUGC-------AGUGU--AGUGCGcu -5'
14065 5' -54.8 NC_003521.1 + 26719 0.67 0.976735
Target:  5'- gCGGAuguacugcucacUGCGGAUGUCGCAa-GCGUa- -3'
miRNA:   3'- gGCCU------------ACGCCUGCAGUGUagUGCGcu -5'
14065 5' -54.8 NC_003521.1 + 48772 0.67 0.976735
Target:  5'- aCCGcc-GCGGACGcCGCGUCugcCGCGc -3'
miRNA:   3'- -GGCcuaCGCCUGCaGUGUAGu--GCGCu -5'
14065 5' -54.8 NC_003521.1 + 123218 0.67 0.976735
Target:  5'- gCUGGGacccucgcUGCGGuCG-CACGUCACGuUGAa -3'
miRNA:   3'- -GGCCU--------ACGCCuGCaGUGUAGUGC-GCU- -5'
14065 5' -54.8 NC_003521.1 + 141359 0.67 0.974308
Target:  5'- aCGGGUGCGGcgGCGgUCG-GUgACGCGGu -3'
miRNA:   3'- gGCCUACGCC--UGC-AGUgUAgUGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 144910 0.67 0.974308
Target:  5'- aCGGcAUGcCGGugGccgaggaguUCAUGUCGCGCGu -3'
miRNA:   3'- gGCC-UAC-GCCugC---------AGUGUAGUGCGCu -5'
14065 5' -54.8 NC_003521.1 + 27418 0.67 0.974308
Target:  5'- gCGGGUGCuGaccaGCGUCuucuuCAUCACGCu- -3'
miRNA:   3'- gGCCUACGcC----UGCAGu----GUAGUGCGcu -5'
14065 5' -54.8 NC_003521.1 + 166094 0.67 0.971702
Target:  5'- gCGGGaGCGGGCcggCAgGUuCACGCGGg -3'
miRNA:   3'- gGCCUaCGCCUGca-GUgUA-GUGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 16852 0.67 0.971702
Target:  5'- gCCGGcgcagGCGGACGUCuacgacguGCGUUcccCGCGGc -3'
miRNA:   3'- -GGCCua---CGCCUGCAG--------UGUAGu--GCGCU- -5'
14065 5' -54.8 NC_003521.1 + 77973 0.67 0.968036
Target:  5'- gCCGGccGCGGGC-UCGCcguucugcacgaugGUCGCGCa- -3'
miRNA:   3'- -GGCCuaCGCCUGcAGUG--------------UAGUGCGcu -5'
14065 5' -54.8 NC_003521.1 + 100078 0.67 0.967145
Target:  5'- aCGGAgGCGGGCGcCuCGaccgccgacgaggacUCGCGCGGg -3'
miRNA:   3'- gGCCUaCGCCUGCaGuGU---------------AGUGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 192722 0.67 0.967145
Target:  5'- cCCGcGAUaGCGGugGUUuuuucuuuuucugcgGCGUC-CGCGGg -3'
miRNA:   3'- -GGC-CUA-CGCCugCAG---------------UGUAGuGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 145867 0.67 0.965929
Target:  5'- cCCGGcgGCGGGCGgCGCcg-ACGaCGAg -3'
miRNA:   3'- -GGCCuaCGCCUGCaGUGuagUGC-GCU- -5'
14065 5' -54.8 NC_003521.1 + 162330 0.67 0.965929
Target:  5'- uCCGGucgGCccguccgaGGuaaGUCACGUCGCGCGc -3'
miRNA:   3'- -GGCCua-CG--------CCug-CAGUGUAGUGCGCu -5'
14065 5' -54.8 NC_003521.1 + 87114 0.67 0.96562
Target:  5'- gCCGcugGUGGACG-CGCGUCccaaggaGCGCGAg -3'
miRNA:   3'- -GGCcuaCGCCUGCaGUGUAG-------UGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 168440 0.68 0.962751
Target:  5'- gCGGcgGCGGGCGUgAaga-GCGUGAu -3'
miRNA:   3'- gGCCuaCGCCUGCAgUguagUGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 116022 0.68 0.962751
Target:  5'- uCCaGGccGCGGugGaagaGCAUCACGCa- -3'
miRNA:   3'- -GG-CCuaCGCCugCag--UGUAGUGCGcu -5'
14065 5' -54.8 NC_003521.1 + 95528 0.68 0.962751
Target:  5'- aCUGGAUGCccGGCGagACGccggCGCGCGAg -3'
miRNA:   3'- -GGCCUACGc-CUGCagUGUa---GUGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 131065 0.68 0.959372
Target:  5'- uCUGGAcGCGGugGcggcgacCGCGgcUCGCGCGGg -3'
miRNA:   3'- -GGCCUaCGCCugCa------GUGU--AGUGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 37327 0.68 0.959372
Target:  5'- uCUGGGUGgGGGCgGUCGCGgaggacgCACGUa- -3'
miRNA:   3'- -GGCCUACgCCUG-CAGUGUa------GUGCGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.