Results 21 - 40 of 222 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14066 | 3' | -54.5 | NC_003521.1 | + | 64386 | 0.66 | 0.98374 |
Target: 5'- -gCGGGCGCGuCUGCagaacgUGGAGCgCGGg -3' miRNA: 3'- gaGUCUGUGC-GGCGaa----ACCUUG-GCCg -5' |
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14066 | 3' | -54.5 | NC_003521.1 | + | 225843 | 0.66 | 0.98374 |
Target: 5'- -cCAcGGCGCGCuCGUggUGGuGCgGGCa -3' miRNA: 3'- gaGU-CUGUGCG-GCGaaACCuUGgCCG- -5' |
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14066 | 3' | -54.5 | NC_003521.1 | + | 101177 | 0.66 | 0.98374 |
Target: 5'- cCUCAGACgGCGuCCGCgc-----CCGGCg -3' miRNA: 3'- -GAGUCUG-UGC-GGCGaaaccuuGGCCG- -5' |
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14066 | 3' | -54.5 | NC_003521.1 | + | 213732 | 0.66 | 0.98374 |
Target: 5'- -cCAGACgGCGCCGCagaaggccgUGGuGgCGGCc -3' miRNA: 3'- gaGUCUG-UGCGGCGaa-------ACCuUgGCCG- -5' |
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14066 | 3' | -54.5 | NC_003521.1 | + | 109721 | 0.66 | 0.983373 |
Target: 5'- -gCAGcCGCGCCGCcccgccguccGGAGCCcGCg -3' miRNA: 3'- gaGUCuGUGCGGCGaaa-------CCUUGGcCG- -5' |
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14066 | 3' | -54.5 | NC_003521.1 | + | 111043 | 0.66 | 0.981842 |
Target: 5'- cCUCGG-CGCGCaCGUgcgcGGGACaGGCg -3' miRNA: 3'- -GAGUCuGUGCG-GCGaaa-CCUUGgCCG- -5' |
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14066 | 3' | -54.5 | NC_003521.1 | + | 92375 | 0.66 | 0.981842 |
Target: 5'- aUCAG-CACGCaccgGCcaccccUGGAgccGCCGGCg -3' miRNA: 3'- gAGUCuGUGCGg---CGaa----ACCU---UGGCCG- -5' |
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14066 | 3' | -54.5 | NC_003521.1 | + | 44634 | 0.66 | 0.981842 |
Target: 5'- -gCAGAUgauGCGCCuGUgggugUUGGAgaagugcaACCGGCu -3' miRNA: 3'- gaGUCUG---UGCGG-CGa----AACCU--------UGGCCG- -5' |
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14066 | 3' | -54.5 | NC_003521.1 | + | 92262 | 0.66 | 0.981842 |
Target: 5'- cCUgGGugcCGCuGCCGCUaccggccGGAGCCGGUc -3' miRNA: 3'- -GAgUCu--GUG-CGGCGAaa-----CCUUGGCCG- -5' |
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14066 | 3' | -54.5 | NC_003521.1 | + | 109492 | 0.66 | 0.981842 |
Target: 5'- -cCAGGCGCuCCaGCgagUGGucgcGCCGGCc -3' miRNA: 3'- gaGUCUGUGcGG-CGaa-ACCu---UGGCCG- -5' |
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14066 | 3' | -54.5 | NC_003521.1 | + | 117719 | 0.66 | 0.981842 |
Target: 5'- ---cGAUGCGCCGUcgacgUGGGAgCGGUa -3' miRNA: 3'- gaguCUGUGCGGCGaa---ACCUUgGCCG- -5' |
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14066 | 3' | -54.5 | NC_003521.1 | + | 167691 | 0.66 | 0.981842 |
Target: 5'- -gCGGugACGaCGCUcgUGGAGgaGGCg -3' miRNA: 3'- gaGUCugUGCgGCGAa-ACCUUggCCG- -5' |
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14066 | 3' | -54.5 | NC_003521.1 | + | 90067 | 0.66 | 0.981037 |
Target: 5'- ---cGACGCGCuCGCggagcaguccgGGcAGCCGGCc -3' miRNA: 3'- gaguCUGUGCG-GCGaaa--------CC-UUGGCCG- -5' |
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14066 | 3' | -54.5 | NC_003521.1 | + | 149178 | 0.66 | 0.979781 |
Target: 5'- uCUCGGcGCGCGUCGCc-----ACCGGCg -3' miRNA: 3'- -GAGUC-UGUGCGGCGaaaccuUGGCCG- -5' |
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14066 | 3' | -54.5 | NC_003521.1 | + | 225777 | 0.66 | 0.979781 |
Target: 5'- gCUCGcgcuCGCGCCGCUcgucagGGuGCCaGGCg -3' miRNA: 3'- -GAGUcu--GUGCGGCGAaa----CCuUGG-CCG- -5' |
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14066 | 3' | -54.5 | NC_003521.1 | + | 221679 | 0.66 | 0.979781 |
Target: 5'- uCUCGGucacCACGCCGUg--GGucucguuGCCGaGCa -3' miRNA: 3'- -GAGUCu---GUGCGGCGaaaCCu------UGGC-CG- -5' |
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14066 | 3' | -54.5 | NC_003521.1 | + | 160544 | 0.66 | 0.979781 |
Target: 5'- gUCGGACGCGCCGUcgucuucGAACCaaGCu -3' miRNA: 3'- gAGUCUGUGCGGCGaaac---CUUGGc-CG- -5' |
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14066 | 3' | -54.5 | NC_003521.1 | + | 97565 | 0.66 | 0.979781 |
Target: 5'- -gCAGGuCAgGCCGCggaUGGAGgUGGUg -3' miRNA: 3'- gaGUCU-GUgCGGCGaa-ACCUUgGCCG- -5' |
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14066 | 3' | -54.5 | NC_003521.1 | + | 193159 | 0.66 | 0.979781 |
Target: 5'- gUCGGcGCACaGCauCUcaGGAGCCGGCg -3' miRNA: 3'- gAGUC-UGUG-CGgcGAaaCCUUGGCCG- -5' |
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14066 | 3' | -54.5 | NC_003521.1 | + | 96647 | 0.66 | 0.979781 |
Target: 5'- -cCAG-CGCGCgGCaggcGGcGCCGGCg -3' miRNA: 3'- gaGUCuGUGCGgCGaaa-CCuUGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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