miRNA display CGI


Results 41 - 60 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14066 5' -63.2 NC_003521.1 + 148428 0.66 0.717079
Target:  5'- cGGGCGGccGCgCCGGCGgcuccagggguGGCcg-GUGCGu -3'
miRNA:   3'- -UCCGCC--CGgGGCCGC-----------UCGauaCACGC- -5'
14066 5' -63.2 NC_003521.1 + 150662 0.67 0.640858
Target:  5'- aAGGCGGcuCUCCGGCGGcggcgccgcugcuGCUggGUGCu -3'
miRNA:   3'- -UCCGCCc-GGGGCCGCU-------------CGAuaCACGc -5'
14066 5' -63.2 NC_003521.1 + 155332 0.7 0.483952
Target:  5'- -cGCGGGUCCCGGCGGGg---GcGCGg -3'
miRNA:   3'- ucCGCCCGGGGCCGCUCgauaCaCGC- -5'
14066 5' -63.2 NC_003521.1 + 155498 0.67 0.641809
Target:  5'- cGGCGGGCCgCgGGCcaaGGCUGga-GCGa -3'
miRNA:   3'- uCCGCCCGG-GgCCGc--UCGAUacaCGC- -5'
14066 5' -63.2 NC_003521.1 + 163642 0.71 0.407985
Target:  5'- cGuGCGGGCCUCGGUGcGCgucucgGUGcUGCGg -3'
miRNA:   3'- uC-CGCCCGGGGCCGCuCGa-----UAC-ACGC- -5'
14066 5' -63.2 NC_003521.1 + 168549 0.67 0.613286
Target:  5'- cGGCGgcGGCgCUGGCGGGCUgcggguaagGUG-GCGg -3'
miRNA:   3'- uCCGC--CCGgGGCCGCUCGA---------UACaCGC- -5'
14066 5' -63.2 NC_003521.1 + 168816 0.68 0.55579
Target:  5'- cGGCgcauccugaagcuGGGCCCCaGCGAGCUGc--GCGu -3'
miRNA:   3'- uCCG-------------CCCGGGGcCGCUCGAUacaCGC- -5'
14066 5' -63.2 NC_003521.1 + 169275 0.67 0.62279
Target:  5'- aAGGCGGcGUCgucuucggCGGCGGGCUcgGUGaCGu -3'
miRNA:   3'- -UCCGCC-CGGg-------GCCGCUCGAuaCAC-GC- -5'
14066 5' -63.2 NC_003521.1 + 171660 0.67 0.62279
Target:  5'- cGGCGGGCgUCGG-GAGCgucg-GCGg -3'
miRNA:   3'- uCCGCCCGgGGCCgCUCGauacaCGC- -5'
14066 5' -63.2 NC_003521.1 + 177736 0.72 0.354315
Target:  5'- aGGGCGGGCagcgcgCCGGCGcAGCUGUacgggGUcGCGg -3'
miRNA:   3'- -UCCGCCCGg-----GGCCGC-UCGAUA-----CA-CGC- -5'
14066 5' -63.2 NC_003521.1 + 178800 0.69 0.510763
Target:  5'- cGGGCGaGGCaugCCCGGCGGGCgg-GU-CGa -3'
miRNA:   3'- -UCCGC-CCG---GGGCCGCUCGauaCAcGC- -5'
14066 5' -63.2 NC_003521.1 + 186919 0.66 0.679715
Target:  5'- aAGGgGGGCgCCGGUG-GCgggGgcgGCGg -3'
miRNA:   3'- -UCCgCCCGgGGCCGCuCGauaCa--CGC- -5'
14066 5' -63.2 NC_003521.1 + 187252 0.69 0.492816
Target:  5'- gAGGC-GGCCCCGGgaGAGCUAgagagacGCGa -3'
miRNA:   3'- -UCCGcCCGGGGCCg-CUCGAUaca----CGC- -5'
14066 5' -63.2 NC_003521.1 + 197489 0.68 0.603795
Target:  5'- cGGCGGGCCggaCGGCGcggAGCaGUGUuCGu -3'
miRNA:   3'- uCCGCCCGGg--GCCGC---UCGaUACAcGC- -5'
14066 5' -63.2 NC_003521.1 + 197855 0.69 0.535407
Target:  5'- cGGUGGGCgCCGGCGggucgcgcucgcugGGCUGcagGCGg -3'
miRNA:   3'- uCCGCCCGgGGCCGC--------------UCGAUacaCGC- -5'
14066 5' -63.2 NC_003521.1 + 198584 0.7 0.483952
Target:  5'- cGGCGGGCUagaCGcCGAGCUGagguugugGUGCGa -3'
miRNA:   3'- uCCGCCCGGg--GCcGCUCGAUa-------CACGC- -5'
14066 5' -63.2 NC_003521.1 + 210025 0.72 0.339923
Target:  5'- cGGCGGGCCCuCGGUGcGCUAcc-GCGc -3'
miRNA:   3'- uCCGCCCGGG-GCCGCuCGAUacaCGC- -5'
14066 5' -63.2 NC_003521.1 + 212710 0.66 0.716155
Target:  5'- uGGGuCGGGCCUCgaucuugGGCGAGCgcc-UGCu -3'
miRNA:   3'- -UCC-GCCCGGGG-------CCGCUCGauacACGc -5'
14066 5' -63.2 NC_003521.1 + 213960 0.7 0.466459
Target:  5'- cGGGUGGGCgCCGGCucGGGCc--GUGCu -3'
miRNA:   3'- -UCCGCCCGgGGCCG--CUCGauaCACGc -5'
14066 5' -63.2 NC_003521.1 + 223388 0.7 0.466459
Target:  5'- -cGCGGcGCCCCGacGCGGGCcGUGUGgCGc -3'
miRNA:   3'- ucCGCC-CGGGGC--CGCUCGaUACAC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.