Results 41 - 60 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14066 | 5' | -63.2 | NC_003521.1 | + | 171660 | 0.67 | 0.62279 |
Target: 5'- cGGCGGGCgUCGG-GAGCgucg-GCGg -3' miRNA: 3'- uCCGCCCGgGGCCgCUCGauacaCGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 46592 | 0.67 | 0.632299 |
Target: 5'- cAGGCGGGaCCUGGCG-GCUuucUGU-CGg -3' miRNA: 3'- -UCCGCCCgGGGCCGCuCGAu--ACAcGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 111036 | 0.67 | 0.632299 |
Target: 5'- cGGUcGGCCUCGGCGcGCac-GUGCGc -3' miRNA: 3'- uCCGcCCGGGGCCGCuCGauaCACGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 19126 | 0.67 | 0.641809 |
Target: 5'- uGGCGGGCCgCCGGUGuaccAGUcgGaGUGCc -3' miRNA: 3'- uCCGCCCGG-GGCCGC----UCGa-UaCACGc -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 155498 | 0.67 | 0.641809 |
Target: 5'- cGGCGGGCCgCgGGCcaaGGCUGga-GCGa -3' miRNA: 3'- uCCGCCCGG-GgCCGc--UCGAUacaCGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 178800 | 0.69 | 0.510763 |
Target: 5'- cGGGCGaGGCaugCCCGGCGGGCgg-GU-CGa -3' miRNA: 3'- -UCCGC-CCG---GGGCCGCUCGauaCAcGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 187252 | 0.69 | 0.492816 |
Target: 5'- gAGGC-GGCCCCGGgaGAGCUAgagagacGCGa -3' miRNA: 3'- -UCCGcCCGGGGCCg-CUCGAUaca----CGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 87743 | 0.74 | 0.274407 |
Target: 5'- uGGUGGGCCCCGGCccGGGCcccg-GCGg -3' miRNA: 3'- uCCGCCCGGGGCCG--CUCGauacaCGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 38230 | 0.73 | 0.312428 |
Target: 5'- aGGGC-GGCCUCGGCGGGCgg-G-GCGg -3' miRNA: 3'- -UCCGcCCGGGGCCGCUCGauaCaCGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 210025 | 0.72 | 0.339923 |
Target: 5'- cGGCGGGCCCuCGGUGcGCUAcc-GCGc -3' miRNA: 3'- uCCGCCCGGG-GCCGCuCGAUacaCGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 177736 | 0.72 | 0.354315 |
Target: 5'- aGGGCGGGCagcgcgCCGGCGcAGCUGUacgggGUcGCGg -3' miRNA: 3'- -UCCGCCCGg-----GGCCGC-UCGAUA-----CA-CGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 98259 | 0.71 | 0.400011 |
Target: 5'- cGGCGGGCa-CGGCGAGCc-UG-GCGg -3' miRNA: 3'- uCCGCCCGggGCCGCUCGauACaCGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 163642 | 0.71 | 0.407985 |
Target: 5'- cGuGCGGGCCUCGGUGcGCgucucgGUGcUGCGg -3' miRNA: 3'- uC-CGCCCGGGGCCGCuCGa-----UAC-ACGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 122520 | 0.7 | 0.440849 |
Target: 5'- cGGCGGGCaggCCGGCG-GCggugGUaGUGCu -3' miRNA: 3'- uCCGCCCGg--GGCCGCuCGa---UA-CACGc -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 36690 | 0.7 | 0.449298 |
Target: 5'- gAGGcCGGGCUCCGGCGccuggcccgAGCagGUGgagGCGc -3' miRNA: 3'- -UCC-GCCCGGGGCCGC---------UCGa-UACa--CGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 87091 | 0.7 | 0.449298 |
Target: 5'- uGGUGGGCCaCGGUGGGCaucGUGCc -3' miRNA: 3'- uCCGCCCGGgGCCGCUCGauaCACGc -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 86697 | 0.7 | 0.45441 |
Target: 5'- uGGCGGGCCgCGGCG-GCgacgacgagGCGg -3' miRNA: 3'- uCCGCCCGGgGCCGCuCGauaca----CGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 39890 | 0.7 | 0.483952 |
Target: 5'- gGGGUGGGCgugcggucguCCCGGCGGGCgcgaaaGCGc -3' miRNA: 3'- -UCCGCCCG----------GGGCCGCUCGauaca-CGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 155332 | 0.7 | 0.483952 |
Target: 5'- -cGCGGGUCCCGGCGGGg---GcGCGg -3' miRNA: 3'- ucCGCCCGGGGCCGCUCgauaCaCGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 198584 | 0.7 | 0.483952 |
Target: 5'- cGGCGGGCUagaCGcCGAGCUGagguugugGUGCGa -3' miRNA: 3'- uCCGCCCGGg--GCcGCUCGAUa-------CACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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